Table 1 Hub species for all RTI cohorts.
OTU | Hub ID | Niche indicator | No. thresholds met |
|---|---|---|---|
Actinomyces_58 | All | Sal | 1 |
Akkermansia_280 | All | None | 1 |
Moraxella_190 | All | None | 1 |
Prevotella_melaninogenica_22 | All | Sal | 1 |
Veillonella_10 | All | Sal | 1 |
7B_8_687 | 0–2 | None | 2 |
Acinetobacter_calcoaceticus_146 | 0–2 | None | 1 |
Aggregatibacter_354 | 0–2 | None | 1 |
Alloscardovia_316 | 0–2 | None | 2 |
Altererythrobacter_748 | 0–2 | None | 1 |
Anaerostipes_142 | 0–2 | None | 1 |
Blastococcus_281 | 0–2 | None | 2 |
Blastococcus_707 | 0–2 | None | 1 |
Blautia_212 | 0–2 | None | 1 |
Chroococcidiopsis_338 | 0–2 | None | 1 |
Chroococcidiopsis_593 | 0–2 | None | 3 |
Chryseobacterium_299 | 0–2 | None | 1 |
Corynebacterium_111 | 0–2 | None | 2 |
Corynebacterium_162 | 0–2 | None | 1 |
Craurococcus_sp_HM28_1_726 | 0–2 | None | 1 |
Cupriavidus_31 | 0–2 | None | 1 |
Curvibacter_286 | 0–2 | None | 1 |
Dorea_86 | 0–2 | None | 1 |
Erysipelotrichaceae_149 | 0–2 | None | 2 |
Lachnospiraceae_176 | 0–2 | None | 2 |
Limnobacter_245 | 0–2 | None | 2 |
Megasphaera_133 | 0–2 | None | 2 |
Megasphaera_sp_TrE9262_383 | 0–2 | None | 1 |
Moraxella_131 | 0–2 | None | 1 |
Neisseria_lactamica_47 | 0–2 | None | 1 |
Pseudobutyrivibrio_195 | 0–2 | None | 2 |
Rubellimicrobium_596 | 0–2 | None | 1 |
Ruminococcus_bromii_L2_63_112 | 0–2 | None | 2 |
Sphingomonas_573 | 0–2 | None | 1 |
Subdoligranulum_71 | 0–2 | None | 1 |
Varibaculum_199 | 0–2 | None | 1 |
Escherichia_Shigella_267 | 0–2 | Fec | 1 |
Comamonadaceae_118 | 0–2 | Np | 1 |
Dolosigranulum_pigrum_ATCC_51524_147 | 0–2 | Np | 1 |
Enhydrobacter_138 | 0–2 | Np | 1 |
Pseudomonas_158 | 0–2 | Np | 1 |
Haemophilus_211 | 0–2 | Sal | 1 |
Helcococcus_179 | 0–2 and 3–4 | None | 2 |
Scardovia_wiggsiae_F0424_127 | 0–2 and 3–4 | None | 2 |
Bifidobacterium_2 | 0–2 and 3–4 | Fec | 2 |
Rothia_259 | 0–2 and 3–4 | Sal | 1 |
Streptococcus_1 | 0–2 and 3–4 | Sal | 1 |
Actinomyces_100 | 0–2 and 5–7 | None | 1 |
Blautia_308 | 0–2 and 5–7 | None | 1 |
Moryella_119 | 0–2 and 5–7 | None | 1 |
Gallibacterium_Salpingitidis_141 | 0–2 and 5–7 | Sal | 1 |
Akkermansia_210 | 3–4 | None | 1 |
Akkermansia_40 | 3–4 | None | 1 |
boneC3G7_70 | 3–4 | None | 2 |
Clostridium_colinum_487 | 3–4 | None | 1 |
Clostridium_nexile_166 | 3–4 | None | 2 |
Corynebacterium_500 | 3–4 | None | 2 |
Corynebacterium_aurimucosum_ATCC_700975_260 | 3–4 | None | 2 |
Haemophilus_226 | 3–4 | None | 1 |
Lachnoanaerobaculum_115 | 3–4 | None | 1 |
Lactobacillus_plantarum_337 | 3–4 | None | 1 |
Modestobacter_323 | 3–4 | None | 1 |
Moraxella_204 | 3–4 | None | 1 |
Morganella_294 | 3–4 | None | 1 |
Neisseria_345 | 3–4 | None | 2 |
Peptococcus_like_sp_oral_clone_I070_371 | 3–4 | None | 2 |
Propionibacterium_312 | 3–4 | None | 2 |
Sphingomonas_228 | 3–4 | None | 1 |
Turicella_264 | 3–4 | None | 2 |
Zymomonas_335 | 3–4 | None | 2 |
Bifidobacteriaceae_213 | 3–4 | Fec | 1 |
Clostridium_sensu_stricto_1_33 | 3–4 | Fec | 1 |
Collinsella_220 | 3–4 | Fec | 1 |
Eggerthella_189 | 3–4 | Fec | 2 |
Klebsiella_13 | 3–4 | Fec | 1 |
Corynebacterium_350 | 3–4 | Np | 1 |
Moraxella_3 | 3–4 | Np | 1 |
Alloprevotella_23 | 3–4 | Sal | 1 |
Bergeyella_108 | 3–4 | Sal | 1 |
Lachnoanaerobaculum_128 | 3–4 | Sal | 1 |
Lactobacillales_63 | 3–4 | Sal | 1 |
Rothia_126 | 3–4 | Sal | 1 |
Rothia_16 | 3–4 | Sal | 1 |
Rothia_192 | 3–4 | Sal | 1 |
Rothia_287 | 3–4 | Sal | 1 |
Solobacterium_moorei_232 | 3–4 | Sal | 1 |
Streptococcus_20 | 3–4 | Sal | 1 |
Veillonella_66 | 3–4 | Sal | 1 |
Collinsella_110 | 3–4 and 5–7 | None | 1 |
Lachnospiraceae_98 | 3–4 and 5–7 | None | 2 |
Campylobacter_123 | 3–4 and 5–7 | Sal | 1 |
Veillonella_sp_DNF00869_15 | 3–4 and 5–7 | Sal | 1 |
Actinobaculum_schaalii_FB123_CNA_2_408 | 5–7 | None | 1 |
Bacteroides_84 | 5–7 | None | 2 |
Capnocytophaga_196 | 5–7 | None | 2 |
Erysipelotrichaceae_102 | 5–7 | None | 1 |
Erysipelotrichaceae_231 | 5–7 | None | 2 |
Flavonifractor_200 | 5–7 | None | 1 |
Fusicatenibacter_saccharivorans_44 | 5–7 | None | 1 |
Haemophilus_haemolyticus_663 | 5–7 | None | 1 |
Lachnospiraceae_144 | 5–7 | None | 2 |
Lachnospiraceae_230 | 5–7 | None | 2 |
Lachnospiraceae_302 | 5–7 | None | 1 |
Lactobacillus_fermentum_91 | 5–7 | None | 1 |
Moraxella_153 | 5–7 | None | 1 |
Moraxella_412 | 5–7 | None | 1 |
Moraxella_494 | 5–7 | None | 1 |
Neisseria_1000 | 5–7 | None | 1 |
Neisseria_469 | 5–7 | None | 2 |
Neisseria_527 | 5–7 | None | 1 |
Neisseria_949 | 5–7 | None | 1 |
Neisseria_meningitidis_830 | 5–7 | None | 1 |
Parascardovia_denticolens_F0305_486 | 5–7 | None | 1 |
Peptoniphilus_sp_S7MS8_148 | 5–7 | None | 1 |
Peptostreptococcaceae_117 | 5–7 | None | 1 |
Peptostreptococcaceae_75 | 5–7 | None | 1 |
Prevotella_sp_oral_clone_ID019_94 | 5–7 | None | 1 |
Ruminococcaceae_160 | 5–7 | None | 2 |
Ruminococcaceae_358 | 5–7 | None | 1 |
Streptococcus_Salivarius_subsp_thermophilus_364 | 5–7 | None | 1 |
Subdoligranulum_249 | 5–7 | None | 1 |
Bacteroides_74 | 5–7 | Fec | 1 |
Bifidobacterium_dentium_Bd1_28 | 5–7 | Fec | 1 |
Blautia_19 | 5–7 | Fec | 1 |
Collinsella_26 | 5–7 | Fec | 1 |
Erysipelotrichaceae_78 | 5–7 | Fec | 1 |
Parabacteroides_distasonis_82 | 5–7 | Fec | 1 |
ratAN060301C_27 | 5–7 | Fec | 1 |
Ruminococcus_gnavus_CC55_001C_24 | 5–7 | Fec | 1 |
Haemophilus_8 | 5–7 | Np | 1 |
Actinomyces_sp_oral_clone_DR002_81 | 5–7 | Sal | 1 |
Haemophilus_215 | 5–7 | Sal | 1 |
Haemophilus_413 | 5–7 | Sal | 1 |
Veillonella_156 | 5–7 | Sal | 2 |
