Table 1 Proteomes and structure models considered.
From: Real-time structure search and structure classification for AlphaFold protein models
Species | Common name | Reference proteome | # unique UniProt IDs | # original | # domains | # structure predictions with no domains (1D) |
|---|---|---|---|---|---|---|
Arabidopsis thaliana | Arabidopsis | UP000006548 | 27,434 | 27,434 | 37,682 | 5722 |
Caenorhabditis elegans | Nematode worm | UP000001940 | 19,694 | 19,694 | 26,160 | 4277 |
Candida albicans | C. albicans | UP000000559 | 5974 | 5,974 | 9,978 | 743 |
Danio rerio | Zebrafish | UP000000437 | 24,664 | 24,664 | 42,135 | 2530 |
Dictyostelium discoideum | Dictyostelium | UP000002195 | 12,622 | 12,622 | 18,963 | 2986 |
Drosophila melanogaster | Fruit fly | UP000000803 | 13,458 | 13,458 | 19,881 | 2335 |
Escherichia coli | E. coli | UP000000625 | 4363 | 4363 | 5397 | 417 |
Glycine max | Soybean | UP000008827 | 55,799 | 55,799 | 72,217 | 14,146 |
Homo sapiens | Human | UP000005640 | 20,504 | 23,391 | 44,827 | 3302 |
Leishmania infantum | L. infantum | UP000008153 | 7924 | 7924 | 12,257 | 1579 |
Methanocaldococcus jannaschii | M. jannaschii | UP000000805 | 1,773 | 1,773 | 2,097 | 131 |
Mus musculus | Mouse | UP000000589 | 21,615 | 21,615 | 35,216 | 2477 |
Mycobacterium tuberculosis | M. tuberculosis | UP000001584 | 3988 | 3988 | 5170 | 351 |
Oryza sativa | Asian rice | UP000059680 | 43,649 | 43,649 | 39,775 | 19,756 |
Plasmodium falciparum | P. falciparum | UP000001450 | 5187 | 5187 | 7283 | 1162 |
Rattus norvegicus | Rat | UP000002494 | 21,272 | 21,272 | 33,818 | 2664 |
Saccharomyces cerevisiae | Budding yeast | UP000002311 | 6040 | 6040 | 9837 | 967 |
Schizosaccharomyces pombe | Fission yeast | UP000002485 | 5128 | 5128 | 8173 | 637 |
Staphylococcus aureus | S. aureus | UP000008816 | 2888 | 2888 | 3283 | 415 |
Trypanosoma cruzi | T. cruzi | UP000002296 | 19,036 | 19,036 | 26,205 | 5436 |
Zea mays | Maize | UP000007305 | 39,299 | 39,299 | 48,433 | 11,582 |
