Table 2 Comparison of computational time.

From: Real-time structure search and structure classification for AlphaFold protein models

Method

Running time

3DZD

1.64 s

3DZD-NN

4.06 s

DaliLite

4 min 37.2 s

TM-align

10 min 14.4 s

MADOKA

41.4 s

SPalignNS

19 min 18.55 s

ZEAL

3 days 3 h 22 min 7.47 s

  1. We ran the programs on a Linux machine with an Intel(R) Core i7-6900K CPU @ 3.20 GHz. min, minutes; sec, seconds. The running times reported are the average of three independent runs.
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