Table 2 Extracted read pairs crossing the transgene insertion site derived from original and modified TranSeq pipeline in G281 rice and WT.
G281 | Reason | WT (Xiushui 110) | Reason | |||
|---|---|---|---|---|---|---|
Not filtered | Filtered | Not Filtered | Filtered | |||
Chr 01 | 17 | 0 | Not really positivesa | 17 | 0 | Not really positivesa |
Chr 02 | 75 | 2 | Not really positivesb | 94 | 4 | Not really positivesb |
Chr 03 | 70 | 62 | candidate | 9 | 0 | Not really positivesb |
Chr 04 | 1 | 1 | noise sequences/alignment jitter | 0 | 0 | |
Chr 06 | 1 | 1 | noise sequences/alignment jitter | 0 | 0 | |
Chr 07 | 0 | 0 | 1 | 1 | noise sequences/alignment jitter | |
Chr 08 | 1 | 1 | noise sequences/alignment jitter | 0 | 0 | |
Chr 10 | 155 | 0 | Not really positivesa | 141 | 0 | Not really positivesa |
Chr 11 | 1 | 1 | noise sequences/alignment jitter | 0 | 0 | |
Chr 12 | 1 | 1 | noise sequences/alignment jitter | 0 | 0 | |
