Table 4 Statistics of the prior and benchmark networks for hHEP and hESC.

From: NetREX-CF integrates incomplete transcription factor data with gene expression to reconstruct gene regulatory networks

  

No. of TFs

No. of genes

No. of edges

No. of overlap with STRING

No. of overlap with non-specific

No. of overlap with cell-specific

hHEP

STRING

620

5611

35,743

35,743

2806

935

 

Non-specific

566

3258

26,579

2806

26,579

9493

 

Cell-specific (benchmark dataset)

40

5692

87,929

935

9493

87,929

hESC

STRING

705

3830

41,331

41,331

3456

1381

 

Non-specific

652

6621

32,300

3456

32,300

9880

 

Cell-specific (benchmark dataset)

55

6542

112,590

1381

9880

112,590