Fig. 5: Genome-wide occupancy profile of KYP. | Communications Biology

Fig. 5: Genome-wide occupancy profile of KYP.

From: Arabidopsis histone H3 lysine 9 methyltransferases KYP/SUVH5/6 are involved in leaf development by interacting with AS1-AS2 to repress KNAT1 and KNAT2

Fig. 5

a Integrated Genome Viewer showing the binding of KYP on KNAT1 and KNAT2 genomic regions. Bars: normalized reads = 40. b Pie charts showing the distribution of KYP annotated genic and intergenic regions in the genome. c Plotprofile showing the occupancy rates of KYP, H2A, H2A.Z, H2A.X, H2A.W and H1 near the hetrochromatic region of chromosome 1 (Chr. 1). The dots indicated the log2 value of normalized reads, and the lines indicated smoothed patterns of each marker. d Distribution of gene types among all of the KYP-targeted genes. e Metagene ChIP-seq binding profiles of KYP among all coding genes and TE genes within the Arabidopsis genome. The profile is from 2 kb upstream of the TSS to 0.5 kb downstream of the TTS, and the gene lengths were scaled to the same size. f Boxplots showing the binding of KYP:FLAG in coding genes and TEs. All annotated coding genes (n.= 27420) and TEs (n.= 31189), or top 10% KYP:FLAG highly targeted coding genes (n.= 2742) and TEs (n.= 3119) were plotted.

Back to article page