Table 1 Model simulation parameters.
Variable or parametera | Value |
|---|---|
Fibrin simulation parameters | |
Monomers per fiber, \({N}_{\rm {{m}}}\) | 200–110054 |
Monomer persistence length, \({L}_{\rm {{p}}}\) | 0.005–1.074 nm54 |
Fibrin radius, \({r}_{{\rm {{fib}}}}\) | 0.05 μm30 |
Temperature, \(T\) | 300 K |
Normalized contour length multiplier, \(C\) | 2.3554 |
Fibrin volume fraction | 0.3%65 |
Fibrin network radius | 23.8 µm |
Platelet simulation parameters | |
Platelet radius, \({r}_{\rm {{p}}}\) | 1.1 μm105 |
Adhesive zone fraction, \({f}_{\rm {{r}}}\) | 0.9 |
Platelet range, \({r}_{{\rm {{fil}}}}\) | 2.2 μm16 |
Adhesion zone force, \({F}_{0}\) | |
Average platelet density | 8 × 105 platelets/mm3 64 |
Fibrin fraction initialized near platelets, \({P}_{{\rm {{fnp}}}}\) | 0.5 (see Supplementary Note 2.1) |
Contraction time | 30 min |
Number of filopodia per platelet | Discretized truncated lognormal distribution (see the section “Model validation” and Fig. 4)106. |
Platelet contractile force-fitted parameters17 | |
\({f}_{0}\), force of platelet for zero stiffness | 2.2 nN |
\(a\), fitting parameter | 61 |
\(b\), fitting parameter | 3.6 |
\(c\), fitting parameter | 132 |
\(d\), fitting parameter | 1.4 nN |
\(\tau\), force relaxation time | 637 s |