Fig. 1: Overview of the A. sinensis (QH) genome.

a Morphology of the sequenced plant. b Hi-C map of chromosomes. c a-b. SNP and indel density and distribution identified between A. sinensis (GS) and A. sinensis (QH); c Density and distribution of LTR retrotransposons (purple: LTR; blue: Copia-type; dark green: Gypsy-type); d Gene density and distribution; e Colinear gene pairs within the genome. The colors of linking lines indicate the number of one-to-one gene pairs in the collinearity blocks: ≥40, green: ≥20, blue: ≥10, gray: ≥5. This figure was prepared by using shinyCircos110.