Table 1 Real datasets used in this study

From: Improving multi-trait genomic prediction by incorporating local genetic correlations

Dataset

No. individuals

Phenotypesa

Original

genotypes

No. SNPs after imputation and quality control

Reference

Human

10,000

HDL, LDL, and TG

SNP chipb

7,798,091

19

Cow

6649

MY, FP, and PP

SNP chipc

11,106,834

37

Pig

2794

BF, LMD, and LMP

Low-coverage sequencingd

9,913,155

38

  1. aHDL high-density lipoprotein, LDL low-density lipoprotein, TG triglycerides, MY milk yield, FP fat percentage, PP protein percentage, BF backfat thickness at 100 kg (mm), LMD loin muscle depth at 100 kg (mm), LMP lean meat percentage at 100 kg. All individuals had no missing for each phenotype. bUK Biobank Axiom Array and UK BiLEVE Axiom Array. cIllumina Bovine SNP50v1, Illumina Bovine SNP50v2, and GeneSeek Genomic Profiler Bovine HD. dAverage sequencing depth: 0.73×.
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