Fig. 6: Phylogenetic tree comparison of PLTs. Core protein components analysis.
From: Discovery of mono-ADP ribosylating toxins with high structural homology to Pseudomonas exotoxin A
a Amino acid sequence relationships for the nine PTLs were inferred using the Maximum Likelihood method and JTT matrix-based model with the highest log likelihood with 713 positions in the final dataset showing the highest log likelihood (−9362.91). b DNA sequence relationships for the nine PTLs were inferred using the Maximum Likelihood method and JTT matrix-based model with the highest log likelihood with 2241 positions in the final dataset showing the highest log likelihood (−15,954.258). In both cases, branch lengths represent the number of substitutions per site (potential evolutionary distance) with bootstrap consensus values determined from 1000 replicates shown at each branch. Splits identified in both (a) and (b) are highlighted (bold line). Comparison of core genome analysis of the nine bacterial genomes for c amino acid and d DNA sequences. Relationships of the nine PLT amino acid sequences were inferred using the Maximum Likelihood method for 145 core genes collected by BLAST examined for 38857 positions in the final dataset highest log likelihood (−493,105.13) via the JTT matrix-based model. Core genome analysis of the nine bacterial genomes used 145 core genes collected by BLAST examined for 116171 positions in the final dataset highest log likelihood (−917,866.687), being conducted in MEGA11. In both cases, branch lengths represent the number of substitutions per site (potential evolutionary distance), with bootstrap consensus values determined from 1000 replicates shown at each branch.
