Table 2 Variant call reduction using the MMARG on a Moroccan genome compared to GRCh38
From: Moroccan genome project: genomic insight into a North African population
Chromosome | HG38 Variant Count | Consensus Variant Count | Difference | Difference % |
|---|---|---|---|---|
chr1 | 381865 | 211842 | 170023 | 4452 |
chr2 | 364152 | 198805 | 165347 | 4541 |
chr3 | 333913 | 188746 | 145167 | 4347 |
chr4 | 359622 | 203995 | 155627 | 43,28 |
chr5 | 302900 | 177852 | 125048 | 4128 |
chr6 | 290009 | 150834 | 139175 | 4799 |
chr7 | 289797 | 165395 | 124402 | 4293 |
chr8 | 258322 | 146839 | 111483 | 4316 |
chr9 | 203108 | 105796 | 97312 | 4791 |
chr10 | 241812 | 134008 | 107804 | 4458 |
chr11 | 229424 | 119188 | 110236 | 4805 |
chr12 | 227073 | 127632 | 99441 | 4379 |
chr13 | 185588 | 101861 | 83727 | 4511 |
chr14 | 145780 | 76784 | 68996 | 4733 |
chr15 | 129592 | 65348 | 64244 | 4957 |
chr16 | 155475 | 90336 | 65139 | 4190 |
chr17 | 129561 | 65478 | 64083 | 4946 |
chr18 | 133671 | 72383 | 61288 | 4585 |
chr19 | 104306 | 58167 | 46139 | 4423 |
chr20 | 139566 | 79105 | 60461 | 4332 |
chr21 | 80681 | 38828 | 41853 | 5187 |
chr22 | 88986 | 47636 | 41350 | 4647 |
chrX | 104656 | 49420 | 55236 | 5278 |
chrY | 17045 | 6039 | 11006 | 6457 |
chrM | 37 | 22 | 15 | 4054 |
Total | 4978994 | 2737930 | 2241064 | 4501 |
