Fig. 2: Gene ranking comparisons between LMD and other methods. | Communications Biology

Fig. 2: Gene ranking comparisons between LMD and other methods.

From: Cluster-independent multiscale marker identification in single-cell RNA-seq data using localized marker detector (LMD)

Fig. 2

A Comparison of gene rankings by LMD against Seurat v4, COSG, Hotspot, Marcopolo, SCMarker, SEMITONES, and SingleCellHaystack, with concordance measured using the Pearson correlation coefficient of log10-transformed rankings. Highlighted genes fall within LMD's top 100 ranked genes but are outside the top 500 ranked genes of the other method (red), and vice versa (blue). B Top localized genes selected by LMD but not highly ranked by other methods and vice versa. The rankings of these genes across all methods can be found in Supplementary Data 1.

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