Fig. 6: RNAseq data for the core and complete strains of B. cenocepaciaK56-2. | Communications Biology

Fig. 6: RNAseq data for the core and complete strains of B. cenocepaciaK56-2.

From: The acquisition of additional control over quorum sensing regulation reduces the variability of final cell density in Burkholderia

Fig. 6

A Principal component analysis on the scaled gene expression matrix of all samples. PC1: principal component 1. Principal components were calculated using plotPCA function from DESeq2 package implemented in R. B Log2 fold change density chart of six samples per time point. Higher values indicate genes overexpressed in the deletion strain compared to the wild type. The figure cuts the LFC in the range [-2,2] since most of the data are centered in this interval. C Venn diagram of DEGs at three time points, significant at adjusted p < 0.05 (Wald significance test) and ∣lfc∣ > 1 (D) Functional categories of the upregulated genes in the mutant strains. E Functional categories of the downrelgulated genes in the mutant strain.

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