Fig. 3: Proviral sequences aligned to the HIV HXB2 (K03455) reference strain.

Sequences are arranged according to the start (a) and end (b) positions of each individual deletion junction. Each horizontal bar represents an individual proviral sequence generated through FLIPS and coloured according to the study from which it was derived: Hiener (green), Imamichi (red), in-house ARL protocol (yellow). The plots are accompanied by a schematic representation of the HIV-1 genome, the dotted lines highlight the positions of the cPPT and 3’PPT. Created in BioRender. Hardy, J. (2025) https://BioRender.com/wa00q4u.