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Shared genetic architecture between the topology of brain white matter structural connectome and fluid intelligence
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  • Published: 06 May 2026

Shared genetic architecture between the topology of brain white matter structural connectome and fluid intelligence

  • Xinyi Dong  ORCID: orcid.org/0000-0003-0068-51371 na1,
  • Weijie Huang  ORCID: orcid.org/0000-0002-2481-11882 na1,
  • Hao-Jie Chen  ORCID: orcid.org/0000-0002-4362-10561,
  • Yunhao Zhang3,4,
  • Bing Liu  ORCID: orcid.org/0000-0003-2029-51871,
  • Daoqiang Zhang  ORCID: orcid.org/0000-0002-5658-76432,
  • Zhanjun Zhang1,5,
  • Guolin Ma6 &
  • …
  • Ni Shu  ORCID: orcid.org/0000-0003-2420-29101,5,7 

Communications Biology , Article number:  (2026) Cite this article

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Genome-wide association studies
  • Intelligence

Abstract

White matter (WM) connections support efficient interregional communication and form the structural basis of human fluid intelligence. However, the shared genetic architecture between WM structural connectome and fluid intelligence remains largely unknown. In this study, we analyzed diffusion-weighted MRI data from 26,655 UK Biobank participants to construct individual WM connectome and performed genome-wide association analyses on global and regional network topology. We identified 41 single nucleotide polymorphisms (SNPs) significantly associated with global efficiency and 45 SNPs linked to nodal efficiency. Genetic correlations with fluid intelligence were observed for 128 brain regions, with 44 and 3 regions sharing SNPs within chromosomes 6q21 and 3p21.1, respectively. Mendelian randomization revealed causal effects from WM connectome to fluid intelligence, particularly in the orbital and superior frontal gyrus. Finally, integrating polygenic scores with network efficiency improved the prediction of individual fluid intelligence. These findings highlight the genetic basis linking WM connectome topology and fluid intelligence, providing new insights into the neurogenetic underpinnings of fluid intelligence.

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Acknowledgements

This research has been conducted using the UK Biobank Resource under Application Number 49749 and was partially supported by High Performance Computing Platform of Nanjing University of Aeronautics and Astronautics. This work was supported by the Brain Science and Brain-like Intelligence Technology - National Science and Technology Major Project (2022ZD0213300, 2021ZD0200500), National Natural Science Foundation of China (82301608, 32271145, 81871425), Open Research Fund of the State Key Laboratory of Cognitive Neuroscience and Learning (CNLZD2303), Beijing Natural Science Foundation (L252087).

Author information

Author notes
  1. These authors contributed equally: Xinyi Dong, Weijie Huang.

Authors and Affiliations

  1. State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China

    Xinyi Dong, Hao-Jie Chen, Bing Liu, Zhanjun Zhang & Ni Shu

  2. College of Artificial Intelligence, Nanjing University of Aeronautics and Astronautics, the Key Laboratory of Brain-Machine Intelligence Technology, Ministry of Education, Nanjing, China

    Weijie Huang & Daoqiang Zhang

  3. State Key Laboratory of Multimodal Artificial Intelligence Systems, Institute of Automation, Chinese Academy of Sciences, Beijing, China

    Yunhao Zhang

  4. School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing, China

    Yunhao Zhang

  5. BABRI Centre, Beijing Normal University, Beijing, China

    Zhanjun Zhang & Ni Shu

  6. Department of Radiology, China-Japan Friendship Hospital, Beijing, China

    Guolin Ma

  7. Beijing Key Laboratory of Brain Imaging and Connectomics, Beijing Normal University, Beijing, China

    Ni Shu

Authors
  1. Xinyi Dong
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  2. Weijie Huang
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  3. Hao-Jie Chen
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  4. Yunhao Zhang
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  5. Bing Liu
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  6. Daoqiang Zhang
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  7. Zhanjun Zhang
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  8. Guolin Ma
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  9. Ni Shu
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Corresponding authors

Correspondence to Weijie Huang or Ni Shu.

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Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

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Cite this article

Dong, X., Huang, W., Chen, HJ. et al. Shared genetic architecture between the topology of brain white matter structural connectome and fluid intelligence. Commun Biol (2026). https://doi.org/10.1038/s42003-026-10131-0

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  • Received: 02 July 2025

  • Accepted: 15 April 2026

  • Published: 06 May 2026

  • DOI: https://doi.org/10.1038/s42003-026-10131-0

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