Table 1 The choice of parameters for the simulations.
Parameter | Value | Unit | Reference |
|---|---|---|---|
Cell radius, R | 0.5 | dc | |
Cell mass, m | 0.1 | \({f}_{{{{{{{{\rm{c}}}}}}}}}{t}_{{{{{{{{\rm{c}}}}}}}}}^{2}{d}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Pilus spring constant, k | 500 | \({f}_{{{{{{{{\rm{c}}}}}}}}}{d}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Pilus stall force, fs | 180 | fc | |
Maximum retraction velocity of pili, v0 | 2 | \({d}_{{{{{{{{\rm{c}}}}}}}}}{t}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Number of pili per cell | 7 | ||
Simulation time step, Δt | 1 × 10−4 | tc | |
Division rate, α | 1/500 | \({t}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Diplococcus growth parameter, νr | 1.0 | \({d}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Pilus characteristic rupture time t1 | 0.5 | tc | |
Pilus characteristic rupture time t2 | 0.091 | tc | |
Pilus characteristic rupture force Fc,1 | 4.5 | fc | |
Pilus characteristic rupture force Fc,2 | 60 | fc | |
Pilus rupture rate, krupt | 3 | \({t}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Pilus binding cutoff distance, dbind | 2.5 | dc | |
Pilus binding rate, kbind | 10 | \({t}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Pilus-pilus bond rupture force scale, Frupt | 22.5 | fc | |
Maximum conservative force, a0 | 4000 | \({f}_{{{{{{{{\rm{c}}}}}}}}}{d}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Conservative force cutoff, dcon = 2R | 1.0 | dc | |
Diplococcus spring constant, agrowth | 4000 | \({f}_{{{{{{{{\rm{c}}}}}}}}}{d}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Friction coefficient, γ | 50 | \({f}_{{{{{{{{\rm{c}}}}}}}}}{t}_{{{{{{{{\rm{c}}}}}}}}}{d}_{{{{{{{{\rm{c}}}}}}}}}^{-1}\) | |
Thermal energy scale, kBT | 1 × 10−5 | fcdc | |
Dissipative and random force cutoff, ddpd | 1.5 | dc |