Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

Communications Earth & Environment
  • View all journals
  • Search
  • My Account Login
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. communications earth & environment
  3. articles
  4. article
Effect of increasing persistence of alternating drought and rainfall events on grassland soil microbes intensifies over time
Download PDF
Download PDF
  • Article
  • Open access
  • Published: 05 March 2026

Effect of increasing persistence of alternating drought and rainfall events on grassland soil microbes intensifies over time

  • Lingjuan Li  ORCID: orcid.org/0000-0002-3379-42951,2,
  • Dajana Radujković2,
  • Ivan Nijs  ORCID: orcid.org/0000-0003-3111-680X2,
  • Hans J. De Boeck2,
  • Gerrit T. S. Beemster  ORCID: orcid.org/0000-0001-6014-053X3,
  • Qiang Lin  ORCID: orcid.org/0000-0001-8315-34644 &
  • …
  • Erik Verbruggen  ORCID: orcid.org/0000-0001-7015-15152 

Communications Earth & Environment , Article number:  (2026) Cite this article

  • 3079 Accesses

  • Metrics details

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Environmental health
  • Microbial ecology

Abstract

Climate change intensifies persistent weather patterns characterized by progressively longer dry and wet periods. However, how these weather patterns affect soil microbial communities over a long timescale remains elusive. Here we subjected grassland mesocosms to an eight-level gradient of dry-wet alternation frequencies from 1 to 60 days (representing low to high weather persistence) over two growing seasons, simultaneously initiating dry and wet phases. Results showed that the effects of weather persistence on soil microbial communities were stronger in the second year (360 and 480 days), with more divergent microbial communities between treatments, compared to the first year (120 days). Moreover, the dissimilarity of microbial communities across three sampling times decreased as weather persistence increased, except for bacterial communities at the wet conditions. The intensified impacts on microbes are due to progressively persistent weather and decreasing plant productivity. Our findings reveal distinct response mechanisms of soil microbes to weather persistence.

Similar content being viewed by others

High intensity perturbations induce an abrupt shift in soil microbial state

Article Open access 09 October 2023

Microbial growth under drought is confined to distinct taxa and modified by potential future climate conditions

Article Open access 22 September 2023

Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community

Article Open access 06 September 2021

Data availability

The data that support the findings of this study are available at the European Nucleotide Archive under the accession number PRJEB80869.

References

  1. Field, C. B., Barros, V., Stocker, T. F. & Dahe, Q. Managing the Risks of Extreme Events and Disasters to Advance Climate Change Adaptation: Special Report of the Intergovernmental Panel on Climate Change (Cambridge University Press, 2012).

  2. Pfleiderer, P., Schleussner, C.-F., Kornhuber, K. & Coumou, D. Summer weather becomes more persistent in a 2 °C world. Nat. Clim. Change 9, 666–671 (2019).

    Google Scholar 

  3. Schimel, J. P. Life in dry soils: effects of drought on soil microbial communities and processes. Annu. Rev. Ecol. Evol. Syst. 49, 409–432 (2018).

    Google Scholar 

  4. Barnard, R. L., Osborne, C. A. & Firestone, M. K. Responses of soil bacterial and fungal communities to extreme desiccation and rewetting. ISME J. 7, 2229–2241 (2013).

    Google Scholar 

  5. Jiang, Y. et al. Widespread increase of boreal summer dry season length over the Congo rainforest. Nat. Clim. Change 9, 617–622 (2019).

    Google Scholar 

  6. Wang, S., Wang, X., Han, X. & Deng, Y. Higher precipitation strengthens the microbial interactions in semi-arid grassland soils. Glob. Ecol. Biogeogr. 27, 570–580 (2018).

    Google Scholar 

  7. Canarini, A. et al. Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community. Nat. Commun. 12, 5308 (2021).

    Google Scholar 

  8. Maestre, F. T. et al. Increasing aridity reduces soil microbial diversity and abundance in global drylands. Proc. Natl. Acad. Sci. USA 112, 15684–15689 (2015).

    Google Scholar 

  9. de Vries, F. T. et al. Soil bacterial networks are less stable under drought than fungal networks. Nat. Commun. 9, 3033 (2018).

    Google Scholar 

  10. Meisner, A. et al. Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles. ISME J. https://doi.org/10.1038/s41396-020-00844-3 (2021).

  11. Brangarí, A. C., Lyonnard, B. & Rousk, J. Soil depth and tillage can characterize the soil microbial responses to drying-rewetting. Soil Biol. Biochem. 173, https://doi.org/10.1016/j.soilbio.2022.108806 (2022).

  12. Bardgett, R. D. & Caruso, T. Soil microbial community responses to climate extremes: resistance, resilience and transitions to alternative states. Philos. Trans. R. Soc. B 375, 20190112 (2020).

    Google Scholar 

  13. Szekely, A. J. & Langenheder, S. Dispersal timing and drought history influence the response of bacterioplankton to drying-rewetting stress. ISME J. 11, 1764–1776 (2017).

    Google Scholar 

  14. Ochoa-Hueso, R. et al. Drought consistently alters the composition of soil fungal and bacterial communities in grasslands from two continents. Glob. Change Biol. 24, 2818–2827 (2018).

    Google Scholar 

  15. Ryo, M., Aguilar-Trigueros, C. A., Pinek, L., Muller, L. A. H. & Rillig, M. C. Basic principles of temporal dynamics. Trends Ecol. Evol. 34, 723–733 (2019).

    Google Scholar 

  16. Guo, C., Yan, E. R. & Cornelissen, J. H. C. Size matters for linking traits to ecosystem multifunctionality. Trends Ecol. Evol. 37, 803–813 (2022).

    Google Scholar 

  17. Prach, K. & Walker, L. R. Four opportunities for studies of ecological succession. Trends Ecol. Evol. 26, 119–123 (2011).

    Google Scholar 

  18. Nie, M. et al. Positive climate feedbacks of soil microbial communities in a semi-arid grassland. Ecol. Lett. 16, 234–241 (2013).

    Google Scholar 

  19. Chung, Y. A. The temporal and spatial dimensions of plant–soil feedbacks. New Phytol. 237, 2012–2019 (2023).

  20. Su, X. et al. Drought accelerated recalcitrant carbon loss by changing soil aggregation and microbial communities in a subtropical forest. Soil Biol. Biochem. 148, https://doi.org/10.1016/j.soilbio.2020.107898 (2020).

  21. Yang, X., Zhu, K., Loik, M. E. & Sun, W. Differential responses of soil bacteria and fungi to altered precipitation in a meadow steppe. Geoderma 384, https://doi.org/10.1016/j.geoderma.2020.114812 (2021).

  22. Malik, A. et al. Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. ISME J. 14, 1–9 (2020).

    Google Scholar 

  23. Gao, C. et al. Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics. Nat. Commun. 11, 34 (2020).

    Google Scholar 

  24. Hannula, S. E. et al. Time after time: temporal variation in the effects of grass and forb species on soil bacterial and fungal communities. MBio https://doi.org/10.1128/mBio (2019).

  25. Li, L. et al. Longer dry and wet spells alter the stochasticity of microbial community assembly in grassland soils. Soil Biol. Biochem. https://doi.org/10.1016/j.soilbio.2023.108969 (2023).

  26. Lin, Q. et al. Functional conservation of microbial communities determines composition predictability in anaerobic digestion. ISME J. 17, 1920–1930 (2023).

    Google Scholar 

  27. Cline, L. C. et al. Resource availability underlies the plant-fungal diversity relationship in a grassland ecosystem. Ecology 99, 204–216 (2018).

    Google Scholar 

  28. Brigham, L. M. et al. Do plant-soil interactions influence how the microbial community responds to environmental change? Ecology 103, e03554 (2022).

    Google Scholar 

  29. Shi, Y. et al. Interannual climate variability and altered precipitation influence the soil microbial community structure in a Tibetan Plateau grassland. Sci. Total Environ. 714, 136794 (2020).

    Google Scholar 

  30. Allison, S. D. & Goulden, M. L. Consequences of drought tolerance traits for microbial decomposition in the DEMENT model. Soil Biol. Biochem. 107, 104–113 (2017).

    Google Scholar 

  31. Zhang, N. et al. Soil pH filters the association patterns of aluminum-tolerant microorganisms in rice paddies. Msystems 7, e01022-01021 (2022).

    Google Scholar 

  32. Yurkov, A. M. Yeasts of the soil—obscure but precious. Yeast 35, 369–378 (2018).

    Google Scholar 

  33. Cooper, V. S. & Lenski, R. E. The population genetics of ecological specialization in evolving Escherichia coli populations. Nature 407, 736–739 (2000).

    Google Scholar 

  34. Wang, X.-B. et al. A drying-rewetting cycle imposes more important shifts on soil microbial communities than does reduced precipitation. Msystems 7, e00247-00222 (2022).

    Google Scholar 

  35. de Nijs, E. A., Hicks, L. C., Leizeaga, A., Tietema, A. & Rousk, J. Soil microbial moisture dependences and responses to drying-rewetting: the legacy of 18 years drought. Glob. Change Biol. 25, 1005–1015 (2019).

    Google Scholar 

  36. Fujiwara, M. & Takada, T. Environmental Stochasticity. Els 1–8 https://doi.org/10.1002/9780470015902.a0021220.pub2 (2017).

  37. Guhr, A., Borken, W., Spohn, M. & Matzner, E. Redistribution of soil water by a saprotrophic fungus enhances carbon mineralization. Proc. Natl. Acad. Sci. USA 112, 14647–14651 (2015).

    Google Scholar 

  38. KMI. Klimatologisch jaaroverzicht, jaar 2019. https://www.meteo.be/resources/climatology/pdf/klimatologisch_jaaroverzicht_2019.pdf (2019).

  39. Martin, M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet. J. 17, 10–12 (2011).

    Google Scholar 

  40. Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460–2461 (2010).

    Google Scholar 

  41. Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590–D596 (2012).

    Google Scholar 

  42. Nilsson, R. et al. The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Res. 47, D259–D264 (2019).

    Google Scholar 

  43. Louca, S., Parfrey, L. W. & Doebeli, M. Decoupling function and taxonomy in the global ocean microbiome. Science 353, 1272–1277 (2016).

    Google Scholar 

  44. Põlme, S. et al. FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Divers. https://doi.org/10.1007/s13225-020-00466-2 (2021).

  45. Team, R. C. R: a language and environment for statistical computing. R Foundat. Stat. Comput. https://www.R-project.org/ (2023).

  46. Oksanen, J. et al. Package ‘vegan’. Commun. Ecol. Package Version 2, 1–295 (2013).

    Google Scholar 

  47. Bates, D., Mächler, M., Bolker, B. & Walker, S. Fitting linear mixed-effects models Usinglme4. J. Stat. Softw. 67, https://doi.org/10.18637/jss.v067.i01 (2015).

Download references

Acknowledgements

This research was supported by the University of Antwerp BOF/GOA Project REGIME SHIFT and National Natural Science Foundation of China (Grant No. 42507182). The experiments were performed utilizing the ESFRI-AnaEE FATI platform funded by FWO projects G0H4117N, I0000719N and I001921N, and the Flemish government (HERMES Fund). We thank Lisa Psarocosta for assisting with molecular analyses.

Author information

Authors and Affiliations

  1. College of Ecology and Environment, Chengdu University of Technology, Chengdu, PR China

    Lingjuan Li

  2. Research Group of Plants and Ecosystems (PLECO), Department of Biology, University of Antwerp, Wilrijk, Belgium

    Lingjuan Li, Dajana Radujković, Ivan Nijs, Hans J. De Boeck & Erik Verbruggen

  3. Laboratory for Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, Antwerp University, Antwerp, Belgium

    Gerrit T. S. Beemster

  4. Agricultural Microbial Agents Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China

    Qiang Lin

Authors
  1. Lingjuan Li
    View author publications

    Search author on:PubMed Google Scholar

  2. Dajana Radujković
    View author publications

    Search author on:PubMed Google Scholar

  3. Ivan Nijs
    View author publications

    Search author on:PubMed Google Scholar

  4. Hans J. De Boeck
    View author publications

    Search author on:PubMed Google Scholar

  5. Gerrit T. S. Beemster
    View author publications

    Search author on:PubMed Google Scholar

  6. Qiang Lin
    View author publications

    Search author on:PubMed Google Scholar

  7. Erik Verbruggen
    View author publications

    Search author on:PubMed Google Scholar

Contributions

Lingjuan Li: conceptualization, investigation, methodology, formal analysis, writing—original draft. Dajana Radujković, Qiang Lin, Ivan Nijs, Hans De Boeck, and Gerrit T.S. Beemster: review & editing. Erik Verbruggen: conceptualization, supervision, writing—review & editing.

Corresponding authors

Correspondence to Lingjuan Li or Qiang Lin.

Ethics declarations

Competing interests

The authors declare no competing interests.

Peer review

Peer review information

Communications Earth and Environment thanks Xiangyang Shu and the other, anonymous, reviewer(s) for their contribution to the peer review of this work. Primary Handling Editors: Somaparna Ghosh. A peer review file is available.

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary information

Transparent Peer Review file (download PDF )

Supplementary Information (download PDF )

Reporting summary (download PDF )

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Li, L., Radujković, D., Nijs, I. et al. Effect of increasing persistence of alternating drought and rainfall events on grassland soil microbes intensifies over time. Commun Earth Environ (2026). https://doi.org/10.1038/s43247-026-03355-9

Download citation

  • Received: 23 April 2025

  • Accepted: 20 February 2026

  • Published: 05 March 2026

  • DOI: https://doi.org/10.1038/s43247-026-03355-9

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Download PDF

Associated content

Collection

Complexity and dynamics in ecological systems

Advertisement

Explore content

  • Research articles
  • Reviews & Analysis
  • News & Comment
  • Collections
  • Follow us on X
  • Sign up for alerts
  • RSS feed

About the journal

  • Aims & Scope
  • Journal Information
  • Open Access Fees and Funding
  • Journal Metrics
  • Editors
  • Editorial Board
  • Calls for Papers
  • Referees
  • Editorial Values Statement
  • Editorial policies
  • Conferences
  • Contact

Publish with us

  • For authors
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

Communications Earth & Environment (Commun Earth Environ)

ISSN 2662-4435 (online)

nature.com footer links

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing