Table 2 Sequence homology between spacers and protospacers in phage genomes.
Nitratiruptor strain | CRISPR array | Spacer name | Target phage | ||
|---|---|---|---|---|---|
NrS-1 (host SB155-2) | NrS-2 (host YY08-10) | NrS-4 (host YY08-13) | |||
YY08-13 (YY08-26) | CRISPR_YY0813C1 | YY0813C1_s18 | CATCAAATCCATCACAAAGGCGATCGGTGATGAATT (34/36) NRS1_43* (Tape measure protein) | CATCAAATCCATCACAAAAGCAATCGGTGATGAGTT (35/36) NRS2_59* (Tape measure protein) | |
YY0813C1_s20 | CTTCTTTTGTTGTCTTTTTGGTGGTGTTTTTCACATT (33/37) NRS2_59* (Tape measure protein) | ||||
YY0813C1_s21 | TGCTGAAAAACTTTCAAAAGCAAATATCACAACACA (35/36) NRS4_49* (Tape measure protein) | ||||
YY09-18 | CRISPR_YY0918C1 | YY0918C1_s2 | CGCAATCTTTGCGCAGTACGCAATGATCATAT (32/32) NRS2_13* (DNA-binding protein) | CGCATTCTTTGCGCAGTACGCAATGGTCGTAT (29/32) NRS4_09* (DNA-binding protein) | |
YY0918C1_s3 | TCATCGACCTTAAGGTGTTTTTCGCTGTACGGGTTGAGTT (37/40) NRS1_27 (CII) | ||||
YY0918C1_s4 | TCATCGACCTTAAGGTGTTTTTCGCTGTACGGGTTGAGTT (37/40) NRS1_27 (CII) | ||||
CRISPR_YY0918C3 | YY0918C3_s4 | TCCTGTTGGCATAAAACCTCGCTTTCTCCT (26/30) NRS1_33 (Phage head morphogenesis protein) | TTCTATTTGCATAAAACCTCGCTTTTTCTT (27/30) NRS2_47 (Phage head morphogenesis protein) | ||
YY0918C3_s5 | GAACTTTACAAACTCTACTTCATCATCTTC (29/30) NRS1_33 (Phage head morphogenesis protein) | AAACTTTACAAACTCCACTTCATCATCTTC (29/30) NRS2_47 (Phage head morphogenesis protein) | |||
YY0918C3_s7 | TAAAACTTCGAGCGTACGGACTTGAACCTA (28/30) NRS1_43* (Tape measure protein) | TAAAGCTTCGAGCATATGGACTCGAACCTA (28/30) NRS2_59* (Tape measure protein) | |||
YY0918C3_s11 | GCATAGGTATATTGGTGTTGGGGCTTGCGTA (28/31) NRS4_55 (Hypothetical protein) | ||||
DSM16512 | CRISPR_DSM16512C4 | DSM16512C4_s18 | CTGCCAAAGGGGCTGAGTTGTGATAGGACTCAG (32/33) non-coding region between NRS4_19 and NRS4_20 | ||
