Table 1 ANOVA p-value of the variance explained by environmental variables for global model including all tested environmental variables (Global) and for each explanatory variable individually with all the others used as covariables (independently from their order in the model).

Assemblages	Depth	Global	Temp °C	Salinity	O₂ [µmol/Kg]	NO₃⁻ [µmol/L]	Chl-a [µmol/m³]	Particle flux
Phages	Epi	0.001	0.048	0.132	0.126	0.001	0.308	0.013
Phages	MES	0.001	0.006	0.151	0.001	0.230	0.306	0.001
NCDLV	Epi	0.001	0.001	0.033	0.036	0.083	0.019	0.197
NCDLV	MES	0.002	0.043	0.186	0.005	0.031	0.001	0.048
Prokaryotes	Epi	0.035	0.062	0.088	0.303	0.152	0.106	0.606
Prokaryotes	MES	0.006	0.410	0.590	0.004	0.039	0.575	0.418
pico-Eukaryotes	Epi	0.025	0.108	0.576	0.373	0.065	0.173	0.807
pico-Eukaryotes	MES	0.001	0.168	0.304	0.033	0.001	0.016	0.009

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