Table 3 Assembly characteristics and data availability for Enoplosus armatus (fEnoArm2) and Pempheris klunzingeri (fPemKlu1) assemblies as compared to the EBP33 and VGP assembly standards9
From: Ocean Genomes: reference genome resources for marine vertebrates
EBP v6.0 (6.C.Q40) | VGP-2020 (7.c.P6.Q50.C95) | Enoplosus armatus (fEnoArm2) | Pempheris klunzingeri (fPemKlu1) | |||
|---|---|---|---|---|---|---|
Hap 1 | Hap 2 | Hap 1 | Hap 2 | |||
NCBI BioProject | ||||||
Assembly size (Mb) | 579.88 | 578.32 | 646.32 | 632.27 | ||
Number of scaffolds | 135 | 94 | 442 | 84 | ||
Scaffold NG50 (Mb) | >10 | =Chr. NG50 | 25.58 | 25.62 | 27.81 | 28.13 |
Contig NG50 (Mb) | >1 | >10 | 17.10 | 15.96 | 13.65 | 14.88 |
BUSCO completeness (%) | >90 | >95 | 98.9% [S:98.2%, D:0.7%] | 99.0% [S:98.1%, D:0.9%] | 99.3% [S:98.5%, D:0.8%] | 99.3% [S:99.1%, D:0.2%] |
Gaps | <1000 per Gb | <200 per Gb | 114 | 100 | 87 | 93 |
Assembly assigned to chromosomes (%) | >90 | >95 | 99.52 | 99.68 | 96.87 | 99.03 |
QV | >40 | >50 | 61.18 | 60.18 | 57.65 | 62.38 |
61.18 | 59.37 | |||||
Merqury completeness (%) | >90 | >95 | 90.26 | 90.25 | 91.77 | 91.81 |
99.76 | 99.73 | |||||
