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  • Perspective
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Building on monitoring and conservation policies for global soil biodiversity

Abstract

Soil biodiversity is essential for all ecosystem functions and for sustaining life on our planet. Despite this, soil biodiversity has historically been ignored in conservation and management policies and debates. However, the explicit inclusion of soil health in the Kunming-Montreal Global Biodiversity Framework (KMGBF) and consideration of soil biodiversity at the 15th meeting of the Conference of the Parties (COP 15) to the Convention on Biological Diversity (CBD) are important policy breakthroughs; all Parties to the CBD are now invited, on a voluntary basis, to report on the status of their soil biodiversity from 2026. This Perspective discusses pathways to build on the KMGBF and proposes that an integrated and system-based approach for future monitoring and conservation strategies is urgently needed to improve fundamental understanding of soil biodiversity and its contribution to ecosystem services. Currently, infrastructure and expertise barriers, regulatory restrictions, and insufficient data storage and sharing capacity limit the ability to effectively monitor global soil biodiversity. Prioritizing baseline data generation, mechanisms to store and share policy-relevant data, and effective societal engagement and governance at various implementation scales are urgently needed for successful monitoring and conservation outcomes.

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Fig. 1: Soil biodiversity, ecosystem functions and the Sustainable Development Goals.
Fig. 2: Global distribution of soil biodiversity and above-ground terrestrial biodiversity groups.
Fig. 3: Policy framework of soil biodiversity and the path forwards.

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References

  1. Convention on Biological Diversity. Decision 15/28: biodiversity and agriculture. CBD https://www.cbd.int/doc/decisions/cop-15/cop-15-dec-28-en.pdf (2022).

  2. FAO, ITPS, GSBI, SCBD & EC. State of Knowledge of Soil Biodiversity – Status, Challenges and Potentialities. Summary for Policy Makers (FAO, 2020).

  3. Guerra, C. A. et al. Foundations for a national assessment of soil biodiversity. J. Sustain. Agric. Environ. 3, e12116 (2024).

    Article  Google Scholar 

  4. Delgado-Baquerizo, M. et al. Microbial diversity drives multifunctionality in terrestrial ecosystems. Nat. Commun. 7, 10541 (2016).

    Article  CAS  Google Scholar 

  5. Anthony, M. A., Bender, S. F. & van der Heijden, M. G. A. Enumerating soil biodiversity. Proc. Natl Acad. Sci. USA 120, e2304663120 (2023).

    Article  CAS  Google Scholar 

  6. Delgado-Baquerizo, M. et al. Multiple elements of soil biodiversity drive ecosystem functions across biomes. Nat. Ecol. Evol. 4, 210–220 (2020).

    Article  Google Scholar 

  7. Timmis, K. et al. The contribution of microbial biotechnology to Sustainable Development Goals. Microb. Biotechnol. 10, 984–987 (2017).

    Article  Google Scholar 

  8. United Nations Framework Convention on Climate Change. The Paris Agreement. UNFCCC https://unfccc.int/process-and-meetings/the-paris-agreement (2018).

  9. Food and Agriculture Organization of the United Nations. Global Soil Partnership, Action Framework 2022–2030: healthy soils for a healthy life and environment: from promotion to consolidation of sustainable soil management. FAO https://www.fao.org/fileadmin/user_upload/GSP/tenth_PA/GSP_Action_Framework_FINAL.pdf (2025).

  10. Nielsen, U. N., Wall, D. H. & Six, J. Soil biodiversity and the environment. Annu. Rev. Environ. Resour. 40, 63–90 (2015).

    Article  Google Scholar 

  11. Singh, B. K., Bardgett, R. D., Smith, P. & Reay, D. S. Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nat. Rev. Microbiol. 8, 779–790 (2010).

    Article  CAS  Google Scholar 

  12. Crowther, T. W. et al. Microbes, planetary health, and the Sustainable Development Goals. Cell 187, 5195–5216 (2024).

    Article  CAS  Google Scholar 

  13. Singh, B. K. et al. Climate change impacts on plant pathogens, food security and paths forward. Nat. Rev. Microbiol. 21, 640–656 (2023).

    Article  CAS  Google Scholar 

  14. Singh, B. K., Yan, Z. Z., Whittaker, M., Vargas, R. & Abdelfattah, A. Soil microbiomes must be explicitly included in one health policy. Nat. Microbiol. 8, 1367–1372 (2023).

    Article  CAS  Google Scholar 

  15. Samaddar, S. et al. Role of soil in the regulation of human and plant pathogens: soils’ contributions to people. Philos. Trans. R. Soc. B: Biol. Sci. 376, 20200179 (2021).

    Article  Google Scholar 

  16. WWF-UK. Living Planet Report 2022. WWF https://www.wwf.org.uk/our-reports/living-planet-report-2022 (2022).

  17. Geisen, S., Wall, D. H. & van der Putten, W. H. Challenges and opportunities for soil biodiversity in the anthropocene. Curr. Biol. 29, R1036–R1044 (2019).

    Article  CAS  Google Scholar 

  18. Pisa, L. W. et al. Effects of neonicotinoids and fipronil on non-target invertebrates. Environ. Sci. Pollut. Res. 22, 68–102 (2015).

    Article  CAS  Google Scholar 

  19. Veresoglou, S. D., Halley, J. M. & Rillig, M. C. Extinction risk of soil biota. Nat. Commun. 6, 8862 (2015).

    Article  CAS  Google Scholar 

  20. Gillespie, A. Conservation, Biodiversity and International Law (Edward Elgar, 2013).

  21. Junker, R. R. & Farwig, N. Microbes as conservation targets. Preprint at https://ecoevorxiv.org/repository/view/8188/ (2024).

  22. IUCN. The IUCN Red List of threatened species. Version 2024-3. IUCN Red List https://www.iucnredlist.org (2024).

  23. Redford, K. H., Segre, J. A., Salafsky, N., Martinez del Rio, C. & McAloose, D. Conservation and the microbiome. Conserv. Biol. 26, 195–197 (2012).

    Article  Google Scholar 

  24. Guerra, C. A. et al. Global hotspots for soil nature conservation. Nature 610, 693–698 (2022).

    Article  CAS  Google Scholar 

  25. Averill, C. et al. Defending Earth’s terrestrial microbiome. Nat. Microbiol. 7, 1717–1725 (2022).

    Article  CAS  Google Scholar 

  26. Convention on Biological Diversity. Review of the International Initiative for the Conservation and Sustainable Use of Soil Biodiversity and Updated Plan of Action 2020–2030. CBD https://www.cbd.int/doc/c/b782/c3cd/f1a6c03975a063a95ef6ff5b/sbstta-24-l-07-rev1-en.pdf (2022).

  27. Guerra, C. A. et al. Tracking, targeting, and conserving soil biodiversity. Science 371, 239–241 (2021).

    Article  CAS  Google Scholar 

  28. Egidi, E. et al. A few ascomycota taxa dominate soil fungal communities worldwide. Nat. Commun. 10, 2369 (2019).

    Article  Google Scholar 

  29. van den Hoogen, J. et al. Soil nematode abundance and functional group composition at a global scale. Nature 572, 194–198 (2019).

    Article  Google Scholar 

  30. Phillips, H. R. P. et al. Global distribution of earthworm diversity. Science 366, 480–485 (2019).

    Article  CAS  Google Scholar 

  31. Delgado-Baquerizo, M. et al. A global atlas of the dominant bacteria found in soil. Science 359, 320–325 (2018).

    Article  CAS  Google Scholar 

  32. Tedersoo, L. et al. Global diversity and geography of soil fungi. Science 346, 1256688 (2014).

    Article  Google Scholar 

  33. Sutherland, W. J. et al. A horizon scan of biological conservation issues for 2025. Trends Ecol. Evol. 40, 80–89 (2025).

    Article  Google Scholar 

  34. Cameron, E. K. et al. Global mismatches in aboveground and belowground biodiversity. Conserv. Biol. 33, 1187–1192 (2019).

    Article  Google Scholar 

  35. Van Nuland, M. E. et al. Global hotspots of mycorrhizal fungal richness are poorly protected. Nature 645, 414–422 (2025).

    Article  Google Scholar 

  36. Zeiss, R. et al. Challenges of and opportunities for protecting European soil biodiversity. Conserv. Biol. 36, e13930 (2022).

    Article  Google Scholar 

  37. Food and Agriculture Organization of the United Nations. Soil biodiversity initiatives. FAO https://www.fao.org/agriculture/crops/thematic-sitemap/theme/spi/soil-biodiversity/initiatives/en (2025).

  38. Parnell, J. J. et al. Combining science and policy for a unified Global Soil Biodiversity Observatory. Nat. Ecol. Evol. 9, 1302–1306 (2025).

    Article  Google Scholar 

  39. Fortuna, A. The soil biota. Nat. Educ. Knowl. 3, 1 (2012).

    Google Scholar 

  40. Yang, Y. Emerging patterns of microbial functional traits. Trends Microbiol. 29, 874–882 (2021).

    Article  CAS  Google Scholar 

  41. Guerra, C. A. et al. Blind spots in global soil biodiversity and ecosystem function research. Nat. Commun. 11, 3870 (2020).

    Article  CAS  Google Scholar 

  42. Fungi Foundation. Fungi Foundation calls on CITES to strengthen controls over trade in fungi to reinforce fungal conservation. Fungi Foundation https://www.ffungi.org/blog/fungi-foundation-calls-on-cites-to-strengthen-controls-over-trade-in-fungi-to-reinforce-fungal-conservation (2025).

  43. GEO BON. Soil BON. GEO BON https://geobon.org/bons/thematic-bon/soil-bon/ (2014).

  44. Earthworm Society of Britain. Official website. Earthworm Soc https://www.earthwormsoc.org.uk (2024).

  45. Gilbert, J. A. et al. Launching the IUCN Microbial Conservation Specialist Group as a global safeguard for microbial biodiversity. Nat. Microbiol. 10, 2359–2360 (2025).

    Article  CAS  Google Scholar 

  46. Food and Agriculture Organization of the United Nations. How to manage soil biodiversity. FAO https://www.fao.org/agriculture/crops/thematic-sitemap/theme/spi/scpi-home/managing-ecosystems/soil-biodiversity/soil-how/en/ (2025).

  47. Gibson, B. & Eyre-Walker, A. Investigating evolutionary rate variation in bacteria. J. Mol. Evol. 87, 317–326 (2019).

    Article  CAS  Google Scholar 

  48. Jung, M. et al. Areas of global importance for conserving terrestrial biodiversity, carbon and water. Nat. Ecol. Evol. 5, 1499–1509 (2021).

    Article  Google Scholar 

  49. European Union. Thematic strategy for soil protection. EUR-Lex https://eur-lex.europa.eu/EN/legal-content/summary/thematic-strategy-for-soil-protection.html (2011).

  50. European Commission. EU Soil Strategy for 2030: reaping the benefits of healthy soils for people, food, nature and climate. EUR-Lex https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=CELEX%3A52021DC0699 (2021).

  51. Department of Agriculture, Fisheries and Forestry. National Soil Action Plan 2023 to 2028. Agriculture.gov https://www.agriculture.gov.au/agriculture-land/farm-food-drought/natural-resources/soils/national-soil-action-plan (2023).

  52. Orgiazzi, A., Bardgett, R. D. & Barrios, E. Global Soil Biodiversity Atlas (European Commission, 2016).

  53. Colella, J. P. et al. Engaging with the Nagoya Protocol on access and benefit-sharing: recommendations for noncommercial biodiversity researchers. J. Mammal. 104, 430–443 (2023).

    Article  Google Scholar 

  54. Overmann, J. & Scholz, A. H. Microbiological research under the Nagoya Protocol: facts and fiction. Trends Microbiol. 25, 85–88 (2017).

    Article  CAS  Google Scholar 

  55. Deplazes-Zemp, A. et al. The Nagoya Protocol could backfire on the Global South. Nat. Ecol. Evol. 2, 917–919 (2018).

    Article  Google Scholar 

  56. Global Initiative of Sustainable Agriculture and Environment. Official website. Global Sustainable Agriculture https://www.globalsustainableagriculture.org (2025).

  57. Bergström, A. Improving data archiving practices in ancient genomics. Sci. Data 11, 754 (2024).

    Article  Google Scholar 

  58. Wild, S. Quest to map Africa’s soil microbiome begins. Nature 539, 152 (2016).

    Article  CAS  Google Scholar 

  59. Hou, D., Bolan, N. S., Tsang, D. C. W., Kirkham, M. B. & O’Connor, D. Sustainable soil use and management: an interdisciplinary and systematic approach. Sci. Total. Environ. 729, 138961 (2020).

    Article  CAS  Google Scholar 

  60. Cafa, G. et al. Cryopreservation of a soil microbiome using a Stirling 1 cycle approach — a genomic assessment. Preprint at agriRxiv https://doi.org/10.31220/agriRxiv.2021.00066 (2021).

  61. Hernández, D. L., Antia, A. & McKone, M. J. The ecosystem impacts of dominant species exclusion in a prairie restoration. Ecol. Appl. 32, e2592 (2022).

    Article  Google Scholar 

  62. Hou, G. et al. Dominant species play a leading role in shaping community stability in the northern Tibetan grasslands. J. Plant. Ecol. 16, rtac110 (2023).

    Article  Google Scholar 

  63. Berlinches de Gea, A., Hautier, Y. & Geisen, S. Interactive effects of global change drivers as determinants of the link between soil biodiversity and ecosystem functioning. Glob. Change Biol. 29, 296–307 (2023).

    Article  CAS  Google Scholar 

  64. Põlme, S. et al. FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles. Fungal Divers. 105, 1–16 (2020).

    Article  Google Scholar 

  65. Karam-Gemael, M., Decker, P., Stoev, P., Marques, M. I. & Chagas, A. Jr. Conservation of terrestrial invertebrates: a review of IUCN and regional Red Lists for Myriapoda. ZooKeys 930, 221–229 (2020).

    Article  Google Scholar 

  66. Interventions in conservation. Nat. Plants 11, 1–2 (2025).

  67. Duarte, A. C. et al. Effects of protected areas on soil nematode communities in forests of the north of Portugal. Biodivers. Conserv. 33, 73–89 (2024).

    Article  CAS  Google Scholar 

  68. Bolhuis, H. & Grego, M. Cryopreservation and recovery of a complex hypersaline microbial mat community. Cryobiology 114, 104859 (2024).

    Article  CAS  Google Scholar 

  69. Choi, Y. D. Restoration ecology to the future: a call for new paradigm. Restor. Ecol. 15, 351–353 (2007).

    Article  Google Scholar 

  70. Russell, D. J. Quality review enhances the benefits of data publication for soil biodiversity conservation. Appl. Soil. Ecol. 206, 105893 (2025).

    Article  Google Scholar 

  71. Singh, B. K. et al. Enhancing science–policy interfaces for food systems transformation. Nat. Food 2, 838–842 (2021).

    Article  Google Scholar 

  72. Amin, A. Exploring the role of economic incentives and spillover effects in biodiversity conservation policies in sub-Saharan Africa. Ecol. Econ. 127, 185–191 (2016).

    Article  Google Scholar 

  73. Cai, L. et al. Global models and predictions of plant diversity based on advanced machine learning techniques. N. Phytol 237, 1432–1445 (2023).

    Article  Google Scholar 

  74. Delgado-Baquerizo, M. et al. Ecological drivers of soil microbial diversity and soil biological networks in the southern hemisphere. Ecology 99, 583–596 (2018).

    Article  Google Scholar 

  75. Delgado-Baquerizo, M. et al. Plant attributes explain the distribution of soil microbial communities in two contrasting regions of the globe. N. Phytol. 219, 574–587 (2018).

    Article  Google Scholar 

  76. Pugnaire, F. I. et al. Climate change effects on plant-soil feedbacks and consequences for biodiversity and functioning of terrestrial ecosystems. Sci. Adv. 5, eaaz1834 (2019).

    Article  CAS  Google Scholar 

  77. Rillig, M. C. et al. The role of multiple global change factors in driving soil functions and microbial biodiversity. Science 366, 886–890 (2019).

    Article  CAS  Google Scholar 

  78. Rillig, M. C. et al. Increasing the number of stressors reduces soil ecosystem services worldwide. Nat. Clim. Change 13, 478–483 (2023).

    Article  Google Scholar 

  79. Tang, X. et al. Multiple environmental stressors interactively affect soil phosphorus cycling microbiomes. Commun. Earth Environ. 6, 757 (2025).

    Article  Google Scholar 

  80. Lindo, Z. et al. The threat-work: a network of potential threats to soil biodiversity. Soil. Org. 97, 31–46 (2025).

    Google Scholar 

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Acknowledgements

The authors thank M. Kobayashi for providing detailed feedback on the initial draft manuscript. Funding for this work was provided by the Australian Research Council (DP230101448). M.D.-B. acknowledges support from GRASS4FUN (Biodiversa+ 2022) funded by MCIU/AEI Unión Europea and from the Spanish Ministry of Science and Innovation for the I + D + i project SOIL4GROWTH (PID2020-115813RA-I00) funded by MCIN/AEI. The views expressed in this publication are those of the authors and do not necessarily reflect the views or policies of any employer or organization such as the Food and Agriculture Organization (FAO) of the United Nations or the Convention on Biological Diversity (CBD).

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B.K.S., P.T. and M.D.-B. conceived the idea. B.K.S. wrote the first draft and all authors contributed to improvements. T.S-S. carried out mapping analyses and M.G. drew the figures in consultation with B.K.S.

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Correspondence to Brajesh K. Singh.

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B.K.S. serves as an elected Chair of the International Network on Soil Biodiversity (NETSOB) (unpaid voluntary position). C.B. previously worked (2024–2025) for the Food and Agriculture Organization (FAO). The other authors declare no competing interests.

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Nature Reviews Biodiversity thanks Maria Tsiafouli, Gabriele Berg and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.

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Food and Agriculture Organization (FAO) Strategic Framework: https://www.fao.org/strategic-framework/en

Paris Agreement: https://unfccc.int/process-and-meetings/the-paris-agreement

Science Policy Interface: https://www.unep.org/topics/environmental-law-and-governance/environmental-policy/science-policy-interface

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Singh, B.K., Trivedi, P., Sáez-Sandino, T. et al. Building on monitoring and conservation policies for global soil biodiversity. Nat. Rev. Biodivers. 1, 806–816 (2025). https://doi.org/10.1038/s44358-025-00108-y

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