Table 6 Comparison of assembled sequences to sequences available in Genbank.

From: De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens

Genes

# sequences

% pairwise identity

Max length

Min length

nicotianamine synthase

GA_TR9812_c0_g1_i1_m.31802 gi|27528464|emb|CAC82913.1|

2

99.7

322

321

ZIP-like zinc transporter ZNT1 GA_TR13622|c0_g1_i1|m.43014 gi|1003366144|gb|AMO45683.1|

2

99.3

408

408

YSL transporter 2

GA_TR17962_c0_g1_i1_m.57647 gi|82468793|gb|ABB76762.1| gi|86559333|gb|ABD04074.1|

3

99.86

99.86

716

716

YSL transporter 3

GA_TR18642_c0_g1_i1_m.60069 gi|82468795|gb|ABB76763.1| gi|86559335|gb|ABD04075.1|

3

99.7

99.85

672

672

YSL transporter 1

GA_TR19192_c0_g1_i1_m.61490 gi|82468791|gb|ABB76761.1| gi|86559337|gb|ABD04076.1|

3

100

100

693

693

heavy metal ATPase 4

GA_TR19259_c0_g1_i1_m.62343 gi|391225627|gb|AFM38012.1| gi|391225629|gb|AFM38013.1| gi|391225631|gb|AFM38014.1|

4

83.92

83.89

81.81

1194

1090

heavy metal transporter

GA_TR20593_c0_g1_i1_m.68485 gi|66394766|gb|AAY46197.1|

2

100

387

387

hypothetical protein

GA_TR21001_c0_g1_i1_m.69807 gi|91680661|emb|CAI77926.2|

2

86.8

352

349

putative Fe(II) transporter—IRT1

GA_TR21885_c0_g1_i1_m.72011 gi|16304676|emb|CAC86382.1|

2

90.1

346

312

ZIP-like zinc transporter—ZNT1 (ATZIP4 homolog)

LC_TR1212_c10_g1_i1_m.3330

gi|14582255|gb|AAK69429.1|AF275751_1 gi|1003366140|gb|AMO45681.1|

3

100

99.51

408

408

metal transporter NRAMP3

LC_TR1754_c0_g1_i1_m.5997

gi|149688670|gb|ABR27746.1|

2

99.2

512

512

heavy metal ATPase 4

LC_TR10517_c0_g1_i1_m.37057

gi|391225623|gb|AFM38010.1|

gi|391225625|gb|AFM38011.1|

3

98.9

99.7

1187

1186

ZIP-like zinc transporter ZNT2 (ATZIP4 homolog)

LC_TR11232_c0_g1_i1_m.39479

gi|14582257|gb|AAK69430.1|AF275752_1

2

100

422

422

nicotianamine synthase 4

LC_TR12807|c0_g1_i1|m.44700

gi|333733184|gb|AEF97346.1|,

2

100

322

322

chloroplast carbonic anhydrase precursor

LC_TR15339_c0_g1_i1_m.51902

gi|45451864|gb|AAS65454.1|

2

99.1

336

333

metal transporter NRAMP4

LC_TR15506_c0_g1_i1_m.53093

gi|149688672|gb|ABR27747.1|,

2

99.6

511

497

zinc transporter—ZTP1 (ATMTP1 homolog)

LC_TR19215_c0_g1_i1_m.64186

gi|14582253|gb|AAK69428.1|AF275750_1

2

99.7

396

396

  1. Pairwise amino acid identity and the length of the longest and shortest sequence are reported.
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