Table 10 Counts of CAGE peaks associated with transcripts, genes and proteins.

From: FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies

Species

Genome assemblies

Associated transcripts

Associated Protein (UniProt)

Associated HGNC

Associated MGI

Associated Enterz Gene

Human

GRCh37/hg19

93,558

56,011

82,257

—

82,150

 

GRCh38/hg38

108,791

57,935

96,998

—

97,560

Mouse

NCBI37/mm9

61,072

47,755

—

—

56,744

 

GRCm38/mm10

89,471

47,657

—

84,308

79,319

  1. The table shows the number of (robust) CAGE peaks associated with known transcripts, genes in Entrez Gene, HGNC and MGI, and proteins in UniProt. The numbers in GRCh38/hg38 and GRCm37/mm10 rows were counted by the reprocessing project. The numbers of GRCh37/hg19 and NCBI37/mm9 were retrieved from the original paper.
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