Table 1 Analyzed data resources for Suijing18 (SJ18) deposited at figshare or the Rice Functional Genomics and Breeding (RFGB) database.
Subjects | Title | Public links |
|---|---|---|
De novo assembly | Suijing18 Denovo assembly version 1 | Data Citation 5 or http://www.rmbreeding.cn/downloads/sj18/SJ18_v1.fasta.gz |
Repeat-masked de novo assembly | Repeat masked data based on Suijing18 Denovo assembly version 1 | Data Citation 5 or http://www.rmbreeding.cn/downloads/sj18/SJ18_v1.masked.fasta.gz |
Gene annotation results | Annotated genes based on Suijing18 Denovo assembly version 1 | Data Citation 5 or http://www.rmbreeding.cn/downloads/sj18/SJ18.gene.gff3.gz |
ncRNA annotated | Annotated ncRNAs based on Suijing18 Denovo assembly version 1 | Data Citation 5 or http://www.rmbreeding.cn/downloads/sj18/SJ18.ncRNA.gff3.gz |
Repeats annotated | Annotated Repeats based on Suijing18 Denovo assembly version 1 | Data Citation 5 or http://www.rmbreeding.cn/downloads/sj18/SJ18.repeat.gff3.gz |
Functional annotation results based on the alignments from KEGG | Annotated proteins based on Suijing18 Denovo assembly version 1 and KEGG database | Data Citation 5 or http://www.rmbreeding.cn/downloads/sj18/SJ18.kegg.xls.gz |
Functional annotation results based on the alignments from UniProt | Annotated proteins based on Suijing18 Denovo assembly version 1 and Uniprot database | Data Citation 5 or http://www.rmbreeding.cn/downloads/sj18/SJ18.uniprot.xls.gz |
Pathway analysis results | Gene ontology analysis results based on Suijing18 Denovo assembly version 1 | Data Citation 5 or http://www.rmbreeding.cn/downloads/sj18/SJ18.pathway.zip |
