Table 5 Statistics for repetitive sequences identified in the E. chlorotica genome assembly according to detection method and biological category.
From: A draft genome assembly of the solar-powered sea slug Elysia chlorotica
According to method | According to category | ||||
|---|---|---|---|---|---|
Tool | Total repeat length (bp) | % of assembly | Category | Total repeat length (bp) | % of assembly |
RepeatMasker | 51,434,719 | 9.52 | DNA | 33,515,133 | 6.20 |
RepeatProteinMask | 12,318,674 | 2.28 | LINE | 30,286,412 | 5.60 |
RepeatModeler | 127,879,238 | 23.66 | SINE | 19,423,541 | 3.59 |
Tandem Repeats Finder | 55,758,776 | 10.32 | LTR | 14,375,566 | 2.66 |
Combined | 176,039,101 | 32.57 | Tandem repeats | 55,758,776 | 10.32 |
