Table 3 Chosen operating points for the various organisms tested. In order to reduce the number of false positives, a specificity of 99.95% is typically chosen (* for E. coli a lower specificity of 99.0% was chosen due to the small size of the known interaction set). The positive-to-negative ratios (PNR) of the test sets are also given
From: Short Co-occurring Polypeptide Regions Can Predict Global Protein Interaction Maps
Organism | Spec. (%) | Sens. (%) | PNR |
|---|---|---|---|
C. elegans | 99.95 | 9.97 | 1∶15.1 |
E. coli | 99.0* | 14.48 | 1∶6.2 |
H. sapiens | 99.95 | 23.22 | 1∶2.4 |
S. cerevisiae | 99.95 | 8.77 | 1∶2.3 |
S. pombe | 99.95 | 16.89 | 1∶33.9 |