Scientific Reports

Table 2 Quantification Correlation of Short and Long Amplicons in Frozen and FFPE Tissues

From: Quantitative assessment of short amplicons in FFPE-derived long-chain RNA

	Frozen tissue						FFPE tissue			Correlation
RNA	Short A-amplicon			Long-amplicon			Short A-amplicon			Frozen tissue	Short A-amplicon
	P value	Fold change*		P value	Fold change*		P value	Fold change*		Short vs. long	Frozen vs. FFPE
DD3	0.001	0.1	Down	0.009	0.2	Down	0.519	1.0	0	+	-
H19	0.016	5.2	Up	0.012	2.2	Up	0.001	20.3	Up	+	+
MALAT1	0.001	0.1	Down	0.001	0.2	Down	0.052	0.8	0	+	-
MEG3	0.001	0.1	Down	0.151	0.8	0	0.970	0.9	0	-	-
p15AS	0.002	0.2	Down	0.003	0.1	Down	0.791	1.0	0	+	-
UCA1	0.034	4.1	Up	0.003	20.4	Up	0.034	12.7	Up	+	+
CDK6	0.850	1.1	0	0.266	3.1	0	0.129	2.0	0	+	+
JUN	0.001	0.3	Down	0.034	1.3	0	0.233	0.7	0	-	-
MAPK3	0.001	0.3	Down	0.012	0.6	0	0.001	0.4	Down	-	+
PDGFRA	0.001	0.4	Down	0.850	2.8	0	0.016	0.6	0	-	-
PDGFRB	0.034	1.4	0	0.970	0.7	0	0.001	3.3	Up	+	-
PIK3R3	0.470	0.6	0	0.820	0.8	0	0.151	1.1	0	+	+
SMAD3	0.001	0.3	Down	0.001	0.2	Down	0.021	0.6	0	+	-
SMAD4	0.034	0.3	Down	0.233	2.6	0	0.970	0.9	0	-	-
Correlation										64%	36%

*, tumour/normal tissue; +, correlated; -, uncorrelated; Up, Up-regulated; Down, down-regulated; 0, unchanged.

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