Table 1 Sequencing data filter and mapping
L0 (Control) | L3 (3 dpi) | L5 (5 dpi) | L7 (7 dpi) | T0 (Control) | T3 (3 dpi) | T5 (5 dpi) | T7 (7 dpi) | |
|---|---|---|---|---|---|---|---|---|
Raw reads | 18455183 | 19359113 | 28886943 | 30282221 | 18121314 | 19868517 | 27941576 | 28358232 |
Clean reads | 16497848 | 16457860 | 25964127 | 21508237 | 16501725 | 14276535 | 23607746 | 17275229 |
Mapped reads | 15166411 (82.18%) | 15918810 (82.23%) | 25082301 (86.83%) | 20518759 (67.76%) | 15355797 (84.74%) | 13735202 (69.13%) | 22799233 (81.60%) | 15999510 (56.42%) |
Unique mapped reads | 7749540 | 8035638 | 12888438 | 11029048 | 8762889 | 6673943 | 12018715 | 8927363 |
Detected Known miRNAs (reads > 1) | 255 | 249 | 261 | 250 | 249 | 249 | 261 | 248 |
Novel miRNAs (reads > 1) | 159 | 178 | 308 | 239 | 136 | 182 | 285 | 183 |
