Figure 3
Box plot in 5 PCA.
Box Plot of PCs is shown in Fig. 2. The sample contribution to each PC are shown using boxplot classified based on four sample classes. The correlation coefficients used for the hierarchical clustering tree represented in Fig. 1 and shown in the upper triangle in Fig. 2 are for the distances found among the five plots. Vertical line represents genetic distance. Red dots are depicted as measured value of each probe after normalization. P values are shown in a scatter plot (P value of PC3_comp, PC1_mRNA, PC2_mRNA, PC1_miRNA and PC2_miRNA, correspond to 8.68e-03, 1.69e-02, 3.98e-06, 4.74e-02 and 9.42e-03, respectively).
