Table 1 Total number of original and cleaned reads that were mapped to their respective assembled transcripts.
Map to Genome | S1 sample | Control sample | S2 sample | |||
|---|---|---|---|---|---|---|
Number of reads | percentage | Number of reads | percentage | Number of reads | percentage | |
Total reads | 44682577 | 100.00% | 42290681 | 100.00% | 46227640 | 100.00% |
Total base pairs | 4349881212 | 100.00% | 4122064627 | 100.00% | 4508391358 | 100.00% |
perfect match | 30160739 | 67.50% | 28842244 | 68.20% | 31120447 | 67.32% |
< = 2bp mismatch | 5478084 | 12.26% | 4931093 | 11.66% | 5246837 | 11.35% |
unique match | 18020483 | 40.33% | 17592923 | 41.60% | 18407846 | 39.82% |
multi-position match | 19770071 | 42.35% | 17267285 | 40.83% | 20099778 | 43.48% |
Total unmapped reads | 7694340 | 17.22% | 6884923 | 16.28% | 8390317 | 18.15% |
Total mapped reads | 36988237 | 82.78% | 35405758 | 83.72% | 37837323 | 81.85% |
