Table 2 Distribution of tri-, tetra-, and penta- nucleotide SSR loci in the chloroplast genome of A. membranaceus.
SSR type | SSR sequence | Start | End | Location |
|---|---|---|---|---|
tri | (TAT)4 | 4483 | 4494 | IGS a (matK-rbcL) |
tri | (ATA)4 | 32341 | 32352 | IGS(petN-trnC-GCA) |
tri | (TAT)4 | 45484 | 45495 | IGS(rps2-atpI) |
tri | (ATT)4 | 51038 | 51049 | IGS(trnR-GCU-trnS-GCU) |
tri | (TAT)4 | 53563 | 53574 | IGS(psbK-trnQ-UUG) |
tri | (TAT)4 | 54247 | 54258 | IGS(trnQ-UUG-accD) |
tri | (TAT)4 | 60883 | 60894 | IGS(petA-psbJ) |
tri | (ATA)4 | 64011 | 64022 | IGS(trnP-UGG-psaJ) |
tri | (TAA)4 | 83455 | 83463 | IGS(rpl23-trnI-CAU) |
tri | (AAT)4 | 94710 | 94721 | IGS(rps12-3′-trnV-GAC) |
tri | (ATA)4 | 114770 | 114781 | IGS(ndhI-ndhG) |
tri | (TAA)4 | 120393 | 120404 | IGS(trnL-UAG-rpl32) |
tetra | (ATAG)3 | 1686 | 1697 | IGS(psbA-matK) |
tetra | (TTTA)3 | 10123 | 10134 | IGS(trnM-CAU-ndhC) |
tetra | (CTTA)3 | 47735 | 47746 | IGS(atpH-atpF) |
tetra | (ATAG)3 | 55121 | 55132 | IGS(trnQ-UUG-accD) |
tetra | (TCTT)3 | 62405 | 62416 | IGS(psbE-petL) |
tetra | (TAAT)3 | 83444 | 83455 | IGS(rpl23-trnI-CAU) |
tetra | (ATAG)3 | 90687 | 90698 | IGS(trnL-CAA-ndhB) |
tetra | (AGGT)3 | 101290 | 101301 | CDS b (rrn23S) |
tetra | (CAAA)3 | 108493 | 108504 | CDS(ycf1) |
tetra | (TATT)3 | 118107 | 118118 | CDS(ndhD) |
tetra | (AAAT)3 | 119565 | 119576 | IGS(ccsA-trnL-UAG) |
penta | (TATAT)3 | 65384 | 65398 | IGS(rpl33-rps18) |
