Figure 2: Topologies inferred from the three nuclear phylogenomic datasets. | Scientific Reports

Figure 2: Topologies inferred from the three nuclear phylogenomic datasets.

From: Resolving evolutionary relationships in lichen-forming fungi using diverse phylogenomic datasets and analytical approaches

Figure 2

The top panel shows the topology from the ‘RealPhy’ dataset comprised of a 16.8 Mb alignment. The bottom panel shows a comparison between topologies inferred from the ‘CEGMA’ (2.37 Mb) and ‘100, 1 Kb loci’ (0.93 Mb). Specimens representing each species are highlighted with a corresponding color for comparison. The ‘porteri group’ comprised of specimens representing R. occulta (‘occu’), R. polymorpha (‘poly’), and R. porteri (‘port’) is highlighted in brown; and the color of the specimens label corresponds to each of the three distinct taxa. Bootstrap values for each node equaled 100%, unless otherwise noted. Relative tree certainty, including all conflicting partitions (TCA), estimated from individual gene trees is reported for the ‘CEGMA’ and ‘100, 1 Kb loci’ datasets.

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