Table 3 Rate constants calculated from kinetic data in Table 1.

From: Conformational flexibility related to enzyme activity: evidence for a dynamic active-site gatekeeper function of Tyr215 in Aerococcus viridans lactate oxidase

Rate constant

Enzyme

Wild-type avLOX

Y215F

Y215H

Reaction pH

5.5

6.5

9.5

5.5

6.5

9.5

5.5

6.5

9.5

k3 (s−1) a FMN reduction

170 b

270 b

230 b

62 b

120 b

85 b

7.2 b

8.2 b

8.7 b

k5 (s−1) a Pyruvate release

57 c (65%) f

141 c (54%) f

5.3 d (95%) f

12 d (n.d.)

20 d (78%) f

20 d (n.d.)

n.d. (n.d.)

26 c (61%) f

n.d. (n.d.)

k7 [O2](s−1) a,e,g FMN oxidation

275

450

162

n.d.

175

n.d

n.d.

25

n.d.

  1. aRate constant numbering is according to Fig. 1. The value of [O2] was 250 μM.
  2. bk3 is the FMN reduction rate constant kred (Table 1).
  3. ck5 was determined from its relationship with the apparent kcat, derived from Equation 1: k5 = kcat_app/(1-kcat_app/k3-kcat_app/k7[O2]). kcat_app is for reaction at [O2] = 250 μM.
  4. dk5 is the rate constant for the second (slow) phase of absorbance decrease at 455 nm. See kslow in Table 1.
  5. eNote that k7 corresponds to kox (Table 1).
  6. fPercent rate limitation in kcat_app at 250 μM O2 due to k5.
  7. gAs shown in earlier studies1,12,13, the kinetic constants can be used to calculated the kcat at saturating oxygen concentration and also the Km for oxygen: kcat = k3k5/(k3 + k5); Km (O2) = kcat/k7.