Table 1 Comparison of plastid genomic characteristics in seven Ilex species and Helwingia himalaica.
Ilex latifolia | Ilex szechwanensis | Ilex pubescens | Ilex polyneura | Ilexnew sp. | Ilex delavayi | Ilex wilsonii | Helwingia himalaica | |
|---|---|---|---|---|---|---|---|---|
Total paired-end reads | 1,057,844 | 1,292,586 | 1,135,472 | 467,116 | 1,338,864 | 1,201,978 | 1,459,906 | 914,296 |
Aligned paired-end reads | 1,045,069 | 1,257,399 | 1,131,722 | 465,040 | 1,327,085 | 1,198,537 | 1,448,390 | 907,908 |
Mean coverage | 143.8 | 523.2 | 504 | 523.2 | 1006.0 | 562.3 | 342.6 | 188.2 |
Number of contigs | 230 | 84 | 68 | 47 | 44 | 76 | 106 | 142 |
Mean length (bp) | 1,649 | 2,419 | 2,834 | 3,505 | 3,654 | 2,564 | 1,982 | 1,820 |
N50 (bp) | 2,806 | 8,762 | 9,089 | 9,503 | 9,506 | 8,343 | 8,346 | 4,534 |
Sum contigs length (bp) | 379,388 | 203,271 | 192,740 | 164,767 | 160,803 | 194,865 | 210,138 | 258,537 |
Size (bp) | 157,610 | 157,900 | 157,741 | 157,621 | 157,611 | 157,671 | 157,918 | 158,362 |
LSC length (bp) | 86,952 | 87,204 | 87,109 | 87,064 | 86,948 | 87,000 | 87,266 | 87,810 |
SSC length (bp) | 18,429 | 18,513 | 18,436 | 18,435 | 18,434 | 18,436 | 18,432 | 18,560 |
IRs length (bp) | 52,229 | 52,183 | 52,196 | 52,122 | 52,229 | 52,235 | 52,220 | 51,992 |
Protein Genes [unique] | 96[74] | 96[74] | 96[74] | 96[74] | 96[74] | 96[74] | 96[74] | 94[76] |
tRNA [unique] | 40[26] | 40[26] | 40[26] | 40[26] | 40[26] | 40[26] | 40[26] | 40[26] |
rRNA [unique] | 8[0] | 8[0] | 8[0] | 8[0] | 8[0] | 8[0] | 8[0] | 8[0] |
GC content (%) | 37.60 | 37.70 | 37.60 | 37.60 | 37.60 | 37.60 | 37.60 | 37.70 |
