Figure 4
Results of the ClonalFrame analysis on an alignment of the 25 L. pneumophila genomes.
The inferred clonal genealogy of L. pneumophila is shown on the left. Each branch of the tree corresponds to a row of the heat map, which is horizontally aligned according to the core MAUVE whole genome alignment. Each row of the heat map shows the posterior probability of recombination estimated by ClonalFrame on the corresponding branch (y axis) and along the positions of the alignment (x axis). The site-wise posterior probabilities of recombination are color-coded according to the legend shown at the top.
