Table 1 Data of sRNA sequences in the NT, MET and AET library.
Types | NT library A | MET library A | AET library A | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Total sRNA number | Percent of total (%) | Unique sRNA number | Percent of unique (%) | Total sRNA number | Percent of total (%) | Unique sRNA number | Percent of unique (%) | Total sRNA number | Percent of total (%) | Unique sRNA number | Percent of unique (%) | |
Raw reads | 10,850,996 | 100.00 | 1,937,422 | 100.00 | 10,806,944 | 100.00 | 1,967,034 | 100.00 | 10,989,848 | 100.00 | 1,215,890 | 100 |
3ADT&length filter B | 3,985,067 | 36.73 | 878,490 | 45.34 | 3,358,332 | 31.08 | 618,514 | 31.44 | 2,421,294 | 22.03 | 513,294 | 42.22 |
Junk reads | 21,863 | 0.20 | 10,187 | 0.53 | 28,840 | 0.27 | 14,522 | 0.74 | 30,510 | 0.28 | 6,570 | 0.54 |
Rfam C | 720,517 | 6.64 | 50,539 | 2.61 | 580,535 | 5.37 | 40,566 | 2.06 | 675,042 | 6.14 | 34,628 | 2.85 |
mRNA | 2,989,464 | 27.55 | 183,508 | 9.47 | 3,031,582 | 28.05 | 210,920 | 10.72 | 3,564,171 | 32.43 | 112,495 | 9.25 |
Repeats D | 9,757 | 0.09 | 774 | 0.04 | 9,021 | 0.08 | 827 | 0.04 | 5,887 | 0.05 | 476 | 0.04 |
rRNA | 568,456 | 5.24 | 34,268 | 0.32 | 444,594 | 4.11 | 26,649 | 0.25 | 514,197 | 4.68 | 23,682 | 0.22 |
tRNA | 111,052 | 1.02 | 9,357 | 0.09 | 104,212 | 0.96 | 8,066 | 0.07 | 128,180 | 1.17 | 6,867 | 0.06 |
snoRNA | 3,106 | 0.03 | 925 | 0.01 | 2,952 | 0.03 | 853 | 0.01 | 2,748 | 0.03 | 547 | 0 |
snRNA | 2,354 | 0.02 | 1,237 | 0.01 | 2,680 | 0.02 | 1,213 | 0.01 | 3,181 | 0.03 | 741 | 0.01 |
other Rfam RNA | 35,549 | 0.33 | 4,752 | 0.04 | 26,097 | 0.24 | 3,785 | 0.04 | 26,736 | 0.24 | 2,791 | 0.03 |
Valid reads | 3,333,687 | 30.72 | 829,756 | 42.83 | 3,964,329 | 36.68 | 1,095,508 | 55.69 | 4,483,258 | 40.79 | 560,147 | 46.07 |
