Table 1 The selected optimal features for N-linked glycosylation.

From: GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features

Num.

Feature

Position

Software

V1

Normalized average hydrophobicity scales

P10

AAindex81

V2

Absolute accessibility of non-polar side-chain

P1

NACCESS 84

V3

PSSM

P250

PSI-BLAST79

V4

PSSM

P235

PSI-BLAST79

V5

Standard deviation of side-chain depth index

P1

PSAIA 88

V6

Conformational parameter of beta-turn

P10

AAindex81

V7

PSSM

P173

PSI-BLAST79

V8

Absolute accessibility of main chain

P1

NACCESS 84

V9

Mean polarity

P8

AAindex81

V10

Log-odds ratio

P1

DiscoTope 87

V11

Average flexibility indices

P7

AAindex81

V12

Mean polarity

P10

AAindex81

V13

Absolute accessibility of all-atoms

P1

NACCESS 84

V14

PSSM

P274

PSI-BLAST79

  1. Features highlighted in italic indicate structural features, while other features not highlighted are sequence-derived features or amino acid properties.
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