Table 2 The selected optimal features for O-linked glycosylation.

From: GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features

Num.

Feature

Position

Software

V1

Conformational parameter of beta-turn

P8

AAindex81

V2

PSSM

P38

PSI-BLAST79

V3

B factor

P1

PDB file 53

V4

Normalized average hydrophobicity scales

P8

AAindex81

V5

Standard deviation of side-chain depth index

P1

PSAIA 88

V6

PSSM

P293

PSI-BLAST79

V7

PSSM

P248

PSI-BLAST79

V8

PSSM

P8

PSI-BLAST79

V9

PSSM

P128

PSI-BLAST79

V10

Absolute accessibility of main chain

P1

NACCESS 84

V11

Mean polarity

P8

AAindex81

  1. Features highlighted in italic indicate structural features, while other features not highlighted are sequence-derived features or amino acid properties.
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