Table 3 FST outliers detected for the three un-correlated climatic factors in LOSITAN45, ARLEQUIN47 and BAYESCAN49.

From: Genome scans for divergent selection in natural populations of the widespread hardwood species Eucalyptus grandis (Myrtaceae) using microsatellites

SSR locus

MAT

Isothermality

Annual precipitation

L†

A‡

B§

L†

A‡

B§

L†

A‡

B§

EUCeSSR1061

 

       

Embra180

**

  

*

*

    

EUCeSSR347

       

Embra98

   

     

EUCeSSR0502

   

    

EUCeSSR0224

 

       

EUCeSSR0276

       

 

EUCeSSR0979

      

**

  

Embra227

 

       

Embra280

**

     

**

  

EUCeSSR313

 

       

EUCeSSR384

 

     

EUCeSSR0599

 

       

Embra130

      

**

  

EUCeSSR0035

      

  

EUCeSSR151

   

   

 

EUCeSSR686

       

Embra242

   

  

  

Embra120

*

        

EUCeSSR626

       

 

EUCeSSR0455

      

**

*

 

Embra358

*

        

Embra304

***

        

EUCeSSR0103

*

        

Embra188

**

*

       

EUCeSSR0906

  

     

Embra37

   

     

Embra187

**

        

EUCeSSR0755

**

**

  

*

 

***

**

 

Embra233

*

        

EUCeSSR231

    

    

EUCeSSR0620

   

*

     

EUCeSSR880

*

        

EUCeSSR479

   

     

EUCeSSR1042

*

**

    

**

*

 

Embra83

   

     

Embra369

*

        

EUCeSSR1087

   

    

EUCgSSR21

   

     

EUCeSSR522

*

        

Embra197

       

 

EUCeSSR1070

***

  

**

*

 

*

  

Embra88

**

**

 

*

*

    

Embra53

*

  

*

*

    

EUCeSSR0497

*

        

EUCeSSR0845

 

       

Embra217

      

*

  

EUCeSSR0679

*

        

EUCeSSR1044

      

*

  

EUCeSSR0568

       

 

Embra394

***

***

 

***

**

 

***

**

 

EUCeSSR0893

***

**

***

***

**

**

***

**

***

Embra269

      

*

  

EUCeSSR292

***

**

 

*

**

    

EUCeSSR349

      

*

  

EUCeSSR209

*

        

EUCeSSR0849

**

*

 

*

*

    

EUCeSSR1145

 

       

Sub-total

28 (24 + 4)

18 (8 + 10)

1

20 (9 + 11)

12 (9 + 3)

1

15 (13 + 2)

10 (5 + 5)

1

L ∩ A

11 (10.0%; 8 + 3)

10 (9.1%; 8 + 2)

5 (4.5%; 5 + 0)

L ∩ A ∩ B

1 (0.9%)

1 (0.9%)

1 (0.9%)

L ∪ A ∪ B

35 (31.8%; 24 + 11)

22 (20.0%; 10 + 12)

20 (18.2%; 13 + 7)

gSSRs

13 (28.9%)††

8 (17.8%)††

7 (15.6%)††

EST-SSRs

22 (33.8%)††

14 (21.5%)††

13 (20.0%)††

Total

58 (52.7%; 32 + 26)

  
  1. †Confidence levels of the distribution relative to neutral selection: *, above the 95% level; **, above the 99% level; ***, above the 99.9% level; , below the 5% level; , below the 1% level; , below the 0.1% level. ‡Significance levels at the 95% confidence: *, 0.01 < P ≤ 0.05; **, 0.001 < P ≤ 0.01; ***, P ≤ 0.001. Significance levels at the 5% confidence: , 0.01 < P ≤ 0.05; , 0.001 < P ≤ 0.01. §Grades of evidence of selection: **, very strong evidence; ***, decisive evidence. Percentage of the total number of markers used (110). ††Percentage of the total number of genomic SSR markers (45) or EST-SSR markers (65) used. The underlined asterisks and numbers are for balancing selection loci. MAT, mean annual temperature; L, LOSITAN; A, ARLEQUIN; B, BAYESCAN; L ∩ A, LOSITAN and ARLEQUIN; L ∩ A ∩ B, LOSITAN, ARLEQUIN and BAYESCAN; L ∪ A ∪ B, LOSITAN, ARLEQUIN or BAYESCAN.
Back to article page