Table 2 Confirmation by RT-qPCR of the dysregulation for selected genes identified by RNA-seq analysis.
Gene | Gene product | FC (RT-qPCR) | FC (RNA-seq) |
|---|---|---|---|
atl | Bifunctional autolysin | 31.92 ± 18.84 | 5.42 |
rsh | GTP pyrophosphokinase | 33.90 ± 17.22 | 4.91 |
relP | GTP pyrophosphokinase | 23.54 ± 8.95 | 2.21 |
clpC | ATP-dependent Clp protease, ATP-binding subunit | −4.96 ± 0.99 | −22.97 |
clpB | ATP-dependent Clp protease, ATP-binding subunit | −28.03 ± 9.39 | −112.83 |
crtP | Diapolycopene oxygenase | 25.59 ± 14.78 | 3.34 |
dltA | D-alanine—poly(phosphoribitol) ligase subunit 1 | 20.21 ± 11.85 | 3.69 |
sigB | RNA polymerase sigma factor | 16.13 ± 5.73 | 2.56 |
nuc | Thermonuclease | 19.20 ± 11.24 | 5.72 |
icaA | Poly-beta-1,6-N-acetyl-D-glucosamine synthase | 4.06 ± 0.76 | 3.16 |
