Figure 3: Regional association plot of the primary signal (rs13975174) associated with femur weight at GGA1. | Scientific Reports

Figure 3: Regional association plot of the primary signal (rs13975174) associated with femur weight at GGA1.

From: Genetic architecture of bone quality variation in layer chickens revealed by a genome-wide association study

Figure 3

For each plot, the −log10 (observed P-values) of SNPs (y-axis) are presented according to their chromosomal positions (x-axis). The blue line indicates the genome-wide significance level (8.43 × 10−7), and the red line the predicted level. The primary SNP are denoted by large blue circles. SNPs are represented by colored circles according to the target SNP with which they were in strongest LD (r2 > 0.4). The upper part of the figure shows the association results for BMC before conditional analysis on rs13975174. In the lower part of the figure, the P-value of corresponding SNPs fell below the predicted threshold.

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