Table 2 Diversity estimation of the 16S rRNA gene libraries of the goose gut from the sequencing analysis a .

From: Cassava foliage affects the microbial diversity of Chinese indigenous geese caecum using 16S rRNA sequencing

Sample ID b

Reads

OTU

Chao

Ace

Shannon

Simpson

CK-1

83,124

11,804

33,282

59,669

6.51

0.0076

CK-2

79,931

11,567

33,033

60,570

6.35

0.0122

CK-3

75,341

10,869

31,631

60,520

6.18

0.0187

CK-4

70,146

10,116

29,761

56,110

6.08

0.0160

CK-5

73,894

9,730

25,895

47,235

5.90

0.0188

CK-6

73,334

11,210

31,269

56,040

6.41

0.0102

CF5–1

75,345

12,296

33,400

58,588

6.55

0.0095

CF5–2

71174

10524

30621

54,201

6.17

0.0129

CF5–3

73,430

11,785

33,281

59,620

6.44

0.0114

CF5–4

77291

13,036

36,996

66,589

6.58

0.0098

CF5–5

79482

12116

33277

60234

6.38

0.0102

CF5–6

84,883

10,372

26,924

44890

6.24

0.0101

CF10–1

81,096

12,829

36,135

65,404

6.54

0.0095

CF10–2

76,117

10,685

28952

52,824

6.05

0.0164

CF10–3

80,438

8,885

22,792

39,794

5.81

0.0169

CF10–4

74,099

10,327

29,455

53,691

5.97

0.0204

CF10–5

80,233

11,205

30,620

52,934

6.19

0.0135

CF10–6

78,459

11,009

29,683

52,174

6.15

0.0156

  1. aOTUs were defined at 3% dissimilarity. The richness estimators (ACE and Chao) and diversity indices (Shannon and Simpson) were calculated.
  2. bSamples in the CK group included CK1, CK2, CK3, CK4, CK5 and CK6; samples in the CF5 group included CF5–1, CF5–2, CF5–3, CF5–4, CF5–5 and CF5–6; samples in the CF10 group included CF10–1, CF10–2, CF10–3, CF10–4, CF10–5 and CF10–6.
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