Table 3 Physical positions of partial SNPs significantly associated with F. verticillioides seed rot resistance and the predicted function or homology of adjacent candidate genes.

2.36E-04

C

0.074

GRMZM2G008122

(AHA3, ATAHA3, HA3) H( + )-ATPase 3

Stress response related

3.28E-04

T

0.066

GRMZM2G415390

Disease resistance-responsive family protein

Disease resistance related

1.54E-05

C

0.095

GRMZM2G009818

Leucine-rich repeat transmembrane protein kinase family protein

Disease resistance related

3.52E-04

C

0.084

2.83E-04

T

0.076

GRMZM5G891990

(ATPUB13, PUB13) plant U-box 13

Disease resistance related

4.43E-04

G

0.059

GRMZM2G394212

AD/NAD(P)-binding oxidoreductase family protein

Disease resistance related

3.10E-04

A

0.073

GRMZM2G147698

(ATMYB61, MYB61) myb domain protein

Stress response related

2.95E-04

G

0.063

GRMZM2G099010

alpha/beta-Hydrolases superfamily protein

Enzymes related to hydrolysis

2.55E-04

G

0.088

GRMZM2G155314

ankyrin repeat family protein

Stress response related

2.86E-04

G

0.066

GRMZM2G120085

Subtilase family protein

other

1.13E-04

G

0.073

GRMZM2G303118

P-loop containing nucleoside triphosphate hydrolases superfamily

Enzymes related to hydrolysis

3.49E-04

A

0.069

GRMZM2G414252

(HEC1) basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Regulation process

2.22E-04

G

0.071

GRMZM2G117865

S-locus lectin protein kinase family protein

Disease resistance related

2.16E-04

G

0.068

2.86E-04

T

0.075

GRMZM2G154864

Transducin/WD40 repeat-like superfamily protein

5.37E-05

A

0.08

Disease resistance related

1.62E-04

G

0.071

2.04E-04

A

0.076

GRMZM2G106560

(ATWRKY75, WRKY75) WRKY DNA-binding protein 75

Disease resistance related

2.27E-04

T

0.068

GRMZM2G397948

ubiquitin-protein ligases

Disease resistance related

3.81E-04

T

0.066

GRMZM2G138342

(ATNADK-1, NADK1) NAD kinase 1

3.22E-04

A

0.067

Disease resistance related

9.22E-05

G

0.088

AC213654.3_FG004

(EDL3) EID1-like 3

Stress response related

2.51E-05

T

0.098

GRMZM2G468260

RING/U-box superfamily protein

Regulation process

2.35E-05

T

0.099

3.87E-04

T

0.06

GRMZM2G071405

Pentatricopeptide repeat (PPR-like) superfamily protein

other

4.31E-04

T

0.062

3.91E-04

C

0.098

AC234156.1_FG005

(FLA7) FASCICLIN-like arabinoogalactan 7

other

3.05E-04

G

0.066

GRMZM2G160619

Leucine-rich repeat protein kinase family protein

Disease resistance related

2.32E-04

T

0.082

GRMZM2G077828

(ATCNGC7,) cyclic nucleotide gated channel 7

2.32E-04

T

0.082

Disease resistance related

3.11E-04

A

0.082

3.19E-04

A

0.082

2.49E-04

T

0.065

GRMZM2G099255

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

other

1.99E-04

C

0.071

GRMZM2G300771

(AGC2, AGC2-1, AtOXI1, OXI1) AGC (cAMP-dependent cGMP-dependent and protein kinase C) kinase family protein

Stress response related

4.22E-04

C

0.061

GRMZM2G154628

aquaporin protein putative expressed

Stress response related

1.40E-04

T

0.088

GRMZM2G019183

trehalose synthase putative expressed

Disease resistance related

1.67E-04

A

0.07

GRMZM2G018044

Eukaryotic aspartyl protease family protein

Enzymes related to hydrolysis

3.52E-04

T

0.076

GRMZM2G333980

(ATPGIP1, PGIP1) polygalacturonase inhibiting protein

Disease resistance related

3.62E-04

C

0.071

GRMZM2G111224

inter-alpha-trypsin inhibitor heavy chain-related

other

2.81E-04

T

0.065

GRMZM2G055607

P-loop containing nucleoside triphosphate hydrolases superfamily

Enzymes related to hydrolysis

1.78E-04

C

0.079

GRMZM2G434792

Thiamine pyrophosphate dependent pyruvate decarboxylase family

Regulation process

1.40E-04

A

0.083

GRMZM2G176568

Homeodomain-like transcriptional regulator

Regulation process

1.40E-04

A

0.083

1.83E-04

C

0.085

GRMZM2G163658

(MCM8) minichromosome maintenance 8

other

3.56E-04

C

0.064

GRMZM2G374986

Homeodomain-like superfamily protein

Regulation process