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Reviews & Analysis

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  • OpenMS is a flexible, user-friendly, open-source software platform for the biological analysis of mass spectrometry proteomics and metabolomics data. The modular platform allows developers to seamlessly generate custom data-analysis workflows and directly make such ready-made workflows available to biologist end-users. Also in this issue, see the Perspective by Tyanova et al.

    • Hannes L Röst
    • Timo Sachsenberg
    • Oliver Kohlbacher
    Perspective
  • Perseus is a comprehensive, user-friendly software platform for the biological analysis of quantitative proteomics data. It is intended to help biologists with little bioinformatics training to interpret protein expression, post-translational modification and interaction data. Also in this issue, see the Perspective by Röst et al.

    • Stefka Tyanova
    • Tikira Temu
    • Jürgen Cox
    Perspective
  • This Perspective by Vierstra and Stamatoyannopoulos discusses the prospects and challenges of genomic footprinting applied to complex genomes.

    • Jeff Vierstra
    • John A Stamatoyannopoulos
    Perspective

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