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Showing 1–32 of 32 results
Advanced filters: Author: Abhay Kotecha Clear advanced filters
  • Foot-and-mouth disease virus binds αvβ6 integrin, via a conserved RGD motif in the flexible, exposed GH loop of capsid protein VP1, for cell entry. Here Kotechaet al.visualize this interaction with the VP1 GH loop extending away from the viral surface, engaging αvβ6 in an open, active state.

    • Abhay Kotecha
    • Quan Wang
    • David I. Stuart
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-8
  • Discovery of new therapeutics has been hampered by the often-limiting resolution and throughput of cryo-EM. Here, the authors determine high-resolution cryo-EM structures of the CDK-activating kinase to establish a methodological framework for the use of cryo-EM in structure-based drug design.

    • Victoria I. Cushing
    • Adrian F. Koh
    • Basil J. Greber
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • Reoviridae undergo a complex assembly pathway in the host cell. Here the authors use cryo-electron tomography to visualize the assembly stages of mammalian orthoreovirus revealing a single shelled intermediate with gross similarity to an early assembly stage of a family of prokaryotic dsRNA viruses.

    • Geoff Sutton
    • Dapeng Sun
    • Mark Boyce
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-7
  • Advances in electron cryo-microscopy hardware allow proteins to be studied at atomic resolution.

    • Takanori Nakane
    • Abhay Kotecha
    • Sjors H. W. Scheres
    Research
    Nature
    Volume: 587, P: 152-156
  • Lipid membrane fusion is an essential function in many biological processes but little is known about membrane fusion in prokaryotes. The authors here study how haloarchaeal pleomorphic viruses (HRPVs) infect archaeal hosts. The structure-function analysis of the spike proteins shed light on prokaryotic membrane fusion.

    • Kamel El Omari
    • Sai Li
    • Elina Roine
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-11
  • The structure of enterovirus 71 in complex with its receptor SCARB2 provides insights into the mechanism of viral uncoating within the endo/lysosome compartment and identifies few conserved key residues within the binding footprint that might facilitate the design of receptor mimic therapeutics.

    • Daming Zhou
    • Yuguang Zhao
    • David I. Stuart
    Research
    Nature Microbiology
    Volume: 4, P: 414-419
  • Foot-and-mouth disease virus (FMDV) capsids are often unstable, thus limiting their use as vaccines. A computational method was used to strengthen protein-protein interfaces and engineer stabilized FMDV capsids, which generated improved antibody responses in vaccinated calves and guinea pigs.

    • Abhay Kotecha
    • Julian Seago
    • David I Stuart
    Research
    Nature Structural & Molecular Biology
    Volume: 22, P: 788-794
  • The structure of Aichi virus — a poorly characterized picornavirus that causes severe gastroenteritis in children — shows intermediate features between those of enteroviruses and cardioviruses, and provides clues into its cellular receptor.

    • Ling Zhu
    • Xiangxi Wang
    • David I. Stuart
    Research
    Nature Microbiology
    Volume: 1, P: 1-6
  • Structural studies of the ribosome-associated endoplasmic reticulum translocon complex based on cryo-electron tomography and molecular modelling reveal multiple intermediate states and interactions between the components of the complex and its cofactors.

    • Max Gemmer
    • Marten L. Chaillet
    • Friedrich Förster
    ResearchOpen Access
    Nature
    Volume: 614, P: 160-167
  • Allosteric control of metabotropic glutamate receptor is of therapeutic value in the treatment of neurological disorders. Here, using cryoEM, the authors describe the diversity of positive allosteric modulation on the metabotropic glutamate receptor, mGlu5.

    • Giuseppe Cannone
    • Ludovic Berto
    • Guillaume Lebon
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-17
  • A time-resolved cryogenic electron microscopy analysis provides structural information on the processes of primary and secondary nucleation of tau amyloid formation, with implications for the development of new therapies.

    • Sofia Lövestam
    • David Li
    • Sjors H. W. Scheres
    ResearchOpen Access
    Nature
    Volume: 625, P: 119-125
  • The authors report on the structures of α-synuclein filaments from the brains of individuals with Parkinson's disease, Parkinson's disease dementia and dementia with Lewy bodies and how they differ from those seen in multiple system atrophy.

    • Yang Yang
    • Yang Shi
    • Michel Goedert
    Research
    Nature
    Volume: 610, P: 791-795
  • Cryo-electron microscopy structures of tau filaments from progressive supranuclear palsy and other tauopathies reveal new filament conformations, and suggest that tauopathies can be classified on several different levels according to their filament folds.

    • Yang Shi
    • Wenjuan Zhang
    • Sjors H. W. Scheres
    Research
    Nature
    Volume: 598, P: 359-363
  • A study using structure determination by cryogenic electron microscopy identifies and characterizes TMEM106B amyloid filaments in human brain, and suggests that their formation is age dependent, with no obvious association with disease.

    • Manuel Schweighauser
    • Diana Arseni
    • Sjors H. W. Scheres
    ResearchOpen Access
    Nature
    Volume: 605, P: 310-314
  • Cryo-electron microscopy structures are reported in which the full-length human α1β3γ2L GABAA receptor in lipid nanodiscs is bound to the channel-blocker picrotoxin, the competitive antagonist bicuculline, the agonist GABA, and the benzodiazepines alprazolam and diazepam.

    • Simonas Masiulis
    • Rooma Desai
    • A. Radu Aricescu
    Research
    Nature
    Volume: 565, P: 454-459
  • Here, the authors provide the structure of mature Coxsackie Virus A10 alone and in complex with its receptor KREMEN1, and of A-particles. This shows how the receptor spans the viral canyon and suggests that receptor binding triggers pocket factor release and conformational changes resulting in expanded particles.

    • Yuguang Zhao
    • Daming Zhou
    • David I. Stuart
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-8
  • To date, no therapeutic agents against enterovirus 71, the causative agent of hand, foot and mouth disease, exist. Here, using Cryo-EM Huang et al. characterize two plasmablast-derived plateau-binding neutralizing antibodies conferring effective protection against lethal EV71 challenge in vivo.

    • Kuan-Ying A. Huang
    • Daming Zhou
    • David I. Stuart
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • Double-shelled bacteriophage φ6 is a well-studied model system used to understand assembly of dsRNA viruses. Here the authors report a near-atomic resolution cryo-EM structure of φ6 and propose a model for the structural transitions occurring in the outer shell during genome packaging.

    • Zhaoyang Sun
    • Kamel El Omari
    • Juha T. Huiskonen
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-9
  • The Ljungan virus is a picornavirus that lacks the internal coat protein VP4, and the packaging of its RNA genome is poorly understood. Here, the authors use cryo-electron microscopy to visualize this virus and suggest that it uses a different mechanism to other viruses for encapsidation of its genome.

    • Ling Zhu
    • Xiangxi Wang
    • David I. Stuart
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-9
  • The Cdc45-MCM-GINS (CMG) helicase unwinds DNA during replication, a process that requires the ATPase-dependent activity of the MCM complex. Using cryo-EM reconstructions of the CMG complex in different conformations, the authors propose a model where the N-terminal and AAA+ domains of MCM work in concert to translocate along DNA.

    • Ferdos Abid Ali
    • Ludovic Renault
    • Alessandro Costa
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-11
  • Electron cryomicroscopy can allow the elucidation of macromolecular structures; however, mismatches in symmetry between different components limit the attainable resolution. Here, the authors set out a computational method for extracting and retaining information from such components.

    • Serban L. Ilca
    • Abhay Kotecha
    • Juha T. Huiskonen
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-8
  • A cryo-EM structure of SARS-CoV-2 ORF3a reveals a new fold conserved in coronaviruses, and functional experiments show ion channel activity that may be important for viral infectivity.

    • David M. Kern
    • Ben Sorum
    • Stephen G. Brohawn
    Research
    Nature Structural & Molecular Biology
    Volume: 28, P: 573-582
  • Despite the success of current vaccination against poliomyelitis, safe, cheap and effective vaccines remain sought for continuing eradication effort. Here the authors use plants to express stabilized virus-like particles of type 3 poliovirus that can induce a protective immune response in mice transgenic for the human poliovirus receptor.

    • Johanna Marsian
    • Helen Fox
    • George P. Lomonossoff
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-9
  • A new sample-delivery method for serial X-ray crystallography exploits the full repetition rate of the X-ray free-electron laser at the LCLS facility, thus enabling efficient, high-speed data collection to solve the three-dimensional structures of viruses.

    • Philip Roedig
    • Helen M Ginn
    • Alke Meents
    Research
    Nature Methods
    Volume: 14, P: 805-810
  • Mendonça et al. determine the structures of both in vitro assemblies of the HIV structural precursor protein Gag and Gag viral-like particles (VLPs) to 4.2 Å and 4.5 Å resolutions, using cryo-electron tomography and subtomogram averaging. This study provides insights into the future development of small molecule inhibitors for HIV-1 infection.

    • Luiza Mendonça
    • Dapeng Sun
    • Peijun Zhang
    ResearchOpen Access
    Communications Biology
    Volume: 4, P: 1-9