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Showing 51–100 of 384 results
Advanced filters: Author: Adam T. Clark Clear advanced filters
  • The ATLAS Collaboration reports the observation of the electroweak production of two jets and a Z-boson pair. This process is related to vector-boson scattering and allows the nature of electroweak symmetry breaking to be probed.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature Physics
    Volume: 19, P: 237-253
  • The pathogenic function of XBP1-expressing astrocytes in experimental autoimmune encephalomyelitis and multiple sclerosis have been studied using FIND-seq, a new method combining microfluidics cytometry, PCR-based detection of nucleic acids and cell sorting for in-depth single-cell transcriptomics analyses of rare cells.

    • Iain C. Clark
    • Michael A. Wheeler
    • Adam R. Abate
    Research
    Nature
    Volume: 614, P: 326-333
  • Observations of SN 2021yfj reveal that its progenitor is a massive star stripped down to its O/Si/S core, which remarkably continued to expel vast quantities of silicon-, sulfur-, and argon-rich material before the explosion, informing us that current theories for how stars evolve are too narrow.

    • Steve Schulze
    • Avishay Gal-Yam
    • Shrinivas R. Kulkarni
    Research
    Nature
    Volume: 644, P: 634-639
  • Entanglement was observed in top–antitop quark events by the ATLAS experiment produced at the Large Hadron Collider at CERN using a proton–proton collision dataset with a centre-of-mass energy of √s  = 13 TeV and an integrated luminosity of 140 fb−1.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature
    Volume: 633, P: 542-547
  • Climate change effects on food webs may be modulated by ecological variables. Here, the authors report how planktonic food web stability depends on temperature and biodiversity, and show that trophic dynamics and synchrony help elucidate the patterns.

    • Qinghua Zhao
    • Paul J. Van den Brink
    • Frederik De Laender
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-11
  • GM researchers have built a spud that spews out sugar when mashed and boiled, David Adam discovers.

    • David Adam
    News
    Nature
  • Transcriptomic analysis may provide information about the differentiation state and cell of origin of a cancer. Here, the authors assess mRNA signals in 1300 childhood and adult renal tumors and report a fetal origin of childhood tumors and no dedifferentiation of adult tumors.

    • Matthew D. Young
    • Thomas J. Mitchell
    • Sam Behjati
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-19
  • Petrels are wide-ranging, highly threatened seabirds that often ingest plastic. This study used tracking data for 7,137 petrels of 77 species to map global exposure risk and compare regions, species, and populations. The results show higher exposure risk for threatened species and stress the need for international cooperation to tackle marine litter.

    • Bethany L. Clark
    • Ana P. B. Carneiro
    • Maria P. Dias
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-14
  • The perennial grass Miscanthus is a promising biomass crop. Here, via genomics and transcriptomics, the authors reveal its allotetraploid origin, characterize gene expression associated with rhizome development and nutrient recycling, and describe the hybrid origin of the triploid M. x giganteus.

    • Therese Mitros
    • Adam M. Session
    • Daniel S. Rokhsar
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-11
  • New research supports the argument that the presidential ballot paper used in Palm Beach County was confusing.

    • David Adam
    News
    Nature
  • The Vertebrate Genome Project has used an optimized pipeline to generate high-quality genome assemblies for sixteen species (representing all major vertebrate classes), which have led to new biological insights.

    • Arang Rhie
    • Shane A. McCarthy
    • Erich D. Jarvis
    ResearchOpen Access
    Nature
    Volume: 592, P: 737-746
  • This report from the 1000 Genomes Project describes the genomes of 1,092 individuals from 14 human populations, providing a resource for common and low-frequency variant analysis in individuals from diverse populations; hundreds of rare non-coding variants at conserved sites, such as motif-disrupting changes in transcription-factor-binding sites, can be found in each individual.

    • Gil A. McVean
    • David M. Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 491, P: 56-65
  • The heterogeneity of whole-exome sequencing (WES) data generation methods presents a challenge to joint analysis. Here, the authors present a bioinformatics strategy to generate high-quality data from processing diversely generated WES samples, as applied in the Alzheimer’s Disease Sequencing Project.

    • Yuk Yee Leung
    • Adam C. Naj
    • Li-San Wang
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Lineage tracing analyses of cells from two monozygotic twins presenting with myelofibrosis in adulthood provide evidence of in utero transplacental transmission of the tumorigenic clone.

    • Nikolaos Sousos
    • Máire Ní Leathlobhair
    • Adam J. Mead
    ResearchOpen Access
    Nature Medicine
    Volume: 28, P: 1207-1211
  • TRIM7 acts as an antiviral factor during SARS-CoV-2 infection, by ubiquitinating the M protein on K14 and inhibiting caspase-6-dependent apoptosis. The natural K14 mutations in circulating strains support the physiological role of M ubiquitination.

    • Maria Gonzalez-Orozco
    • Hsiang-chi Tseng
    • Ricardo Rajsbaum
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • The goal of the 1000 Genomes Project is to provide in-depth information on variation in human genome sequences. In the pilot phase reported here, different strategies for genome-wide sequencing, using high-throughput sequencing platforms, were developed and compared. The resulting data set includes more than 95% of the currently accessible variants found in any individual, and can be used to inform association and functional studies.

    • Richard M. Durbin
    • David Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 467, P: 1061-1073
  • Disentangling the various pathways by which climate change may drive community shifts in real-world ecosystems is challenging. Here the authors apply a trend attribution approach to a large dataset from the MASTIF database to assess the contribution of direct and indirect effects of climate on tree fecundity in North America, finding that the latter dominate trends by affecting tree growth and size and thereby fecundity.

    • James S. Clark
    • Robert Andrus
    • Roman Zlotin
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-11
  • It remains difficult to distinguish cognate APC–T cell interactions in human tissue sections. Clark and colleagues have developed an imaging–machine-learning pipeline that uses deep convolutional and tuned neural networks to identify the combination of distance and cell-shape features that can discriminate between bystander human APC–T cell interactions and cognate interactions in situ.

    • Vladimir M. Liarski
    • Adam Sibley
    • Marcus R. Clark
    Research
    Nature Immunology
    Volume: 20, P: 503-513
  • Insufficient AHR activation has been suggested in SLE, and augmenting AHR activation therapeutically may prevent CXCL13+ TPH/TFH differentiation and the subsequent recruitment of B cells and formation of lymphoid aggregates in inflamed tissues.

    • Calvin Law
    • Vanessa Sue Wacleche
    • Deepak A. Rao
    Research
    Nature
    Volume: 631, P: 857-866
  • In the I-SPY2.2 trial, patients with high-risk stage 2/3 breast cancer received neoadjuvant datopotamab–deruxtecan plus durvalumab, followed by sequential chemotherapy with or without targeted therapy, with the option of early surgical resection after each block of therapy, showing that de-escalation of therapy is possible for several patient subgroups without compromising outcome and avoiding toxicity of standard chemotherapy.

    • Rebecca A. Shatsky
    • Meghna S. Trivedi
    • Laura J. Esserman
    Research
    Nature Medicine
    Volume: 30, P: 3737-3747
  • Sequencing platforms, such as Oxford Nanopore or Pacific Biosciences generate long-read data that preserve long-range genomic information but have high error rates. Here, the authors develop MetaMaps, a computational tool for strain-level metagenomic assignment and compositional estimation using long reads.

    • Alexander T. Dilthey
    • Chirag Jain
    • Adam M. Phillippy
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-12
  • Integrins are activated by many extracellular cues and respond by assembling diverse signalling complexes. Byron et al.use activation state-specific antibodies to proteomically characterize these complexes, and provide insight into integrin-dependent microtubule stabilization.

    • Adam Byron
    • Janet A. Askari
    • Martin J. Humphries
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-14
  • Dietary protein influences metabolic health and ageing. Here Solon-Biet et al. show that, rather than having a direct toxic effect, dietary branched-chain amino acids (BCAAs) appear to induce hyperphagia, owing to an imbalance between BCAAs and other amino acids, which reduces lifespan as a consequence of obesity.

    • Samantha M. Solon-Biet
    • Victoria C. Cogger
    • Stephen J. Simpson
    Research
    Nature Metabolism
    Volume: 1, P: 532-545
  • Transition metal oxides serve as important electrocatalysts for the oxygen evolution reaction, although Co-based oxides typically undergo pH-dependent dynamic surface reconstruction under catalytic conditions. Now the correlations between Co redox dynamics, flat band potential and Co oxidation state changes have been established to explain the pH dependency of oxygen evolution activity.

    • Jinzhen Huang
    • Adam H. Clark
    • Emiliana Fabbri
    ResearchOpen Access
    Nature Chemistry
    Volume: 17, P: 856-864
  • In the I-SPY2.2 trial, patients with high-risk stage 2/3 breast cancer received neoadjuvant datopotamab–deruxtecan, followed by sequential chemotherapy with or without targeted therapy, with the option of early surgical resection after each block of therapy. In a subgroup of patients, the sequential treatment strategy was superior to standard of care.

    • Katia Khoury
    • Jane L. Meisel
    • Laura J. Esserman
    Research
    Nature Medicine
    Volume: 30, P: 3728-3736
  • Combined analysis of new genomic data from 116 ancient hunter-gatherer individuals together with previously published data provides insights into the genetic structure and demographic shifts of west Eurasian forager populations over a period of 30,000 years.

    • Cosimo Posth
    • He Yu
    • Johannes Krause
    ResearchOpen Access
    Nature
    Volume: 615, P: 117-126
  • Dbr1 exhibits debranching specificity and effect on splicing. Here the authors combine co-immunoprecipitation, RNA binding and lariat analysis and suggest a role for Dbr1 interactor AQR in intron recycling. Dbr1 depletion leads to increased dwell time of spliceosome on excised lariats.

    • Luke Buerer
    • Nathaniel E. Clark
    • William G. Fairbrother
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-13
  • Developmental defects in left-right cardiac determination in humans are associated with ciliary dysfunction and low airway epithelial nitric oxide production. Here, the authors show that cytoglobin is essential for nitric oxide signaling, cilia function, and left-right patterning during zebrafish development.

    • Elizabeth R. Rochon
    • Jianmin Xue
    • Paola Corti
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • Multi-omics profiling of 45 human lung samples highlights 80 different cell types along the proximal to distal axis of the lung with certain cell types showing enrichment for disease-associated genes. An immune niche for IgA-expressing plasma cells within airway submucosal glands (SMG) is also identified.

    • Elo Madissoon
    • Amanda J. Oliver
    • Kerstin B. Meyer
    ResearchOpen Access
    Nature Genetics
    Volume: 55, P: 66-77
  • Fe-exchanged zeolite catalysts are known for their ability to remediate NOx and N2O emissions, but their reactivity in mixed streams of NO and N2O remains unclear. Now a suite of operando spectroscopies reveals the active Fe species involved in the process and their synergistic effect during the simultaneous conversion of these pollutants.

    • Filippo Buttignol
    • Jörg W. A. Fischer
    • Davide Ferri
    Research
    Nature Catalysis
    Volume: 7, P: 1305-1315
  • Known genetic loci account for only a fraction of the genetic contribution to Alzheimer’s disease. Here, the authors have performed a large genome-wide meta-analysis comprising 409,435 individuals to discover 6 new loci and demonstrate the efficacy of an Alzheimer’s disease polygenic risk score.

    • Itziar de Rojas
    • Sonia Moreno-Grau
    • Agustín Ruiz
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • Obesity and aging increase Alzheimer’s disease (AD) risk. Here, using an AD mouse model and high-fat diet, we suggest that immune exhaustion links the two risk factors, and identify a metabolite that can hasten immune dysfunction and memory deficit.

    • Stefano Suzzi
    • Tommaso Croese
    • Michal Schwartz
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-19
  • Cells transmit mechanical force to the nucleus via the cytoskeleton. Here, the authors reveal a role for the actin regulator Mena in force transmission at the nuclear envelope, where it regulates nuclear architecture, chromatin organization and gene expression.

    • Frederic Li Mow Chee
    • Bruno Beernaert
    • Adam Byron
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-19
  • In Alzheimer’s disease (AD) tau and neurodegeneration have complex regional relationships. Here, the authors show neuronal hypometabolism discordant with tau burden defines functional resilience or susceptibility to Alzheimer’s pathology via limbic/cortical axes. Susceptible groups have faster cognitive decline and evidence of non-Alzheimer’s pathologies.

    • Michael Tran Duong
    • Sandhitsu R. Das
    • Ilya M. Nasrallah
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-15
  • In this study the authors identify a possible link between the gene FAM222A and brain atrophy. The protein it encodes is found to accumulate in plaques seen in Alzheimer’s disease, and functional analysis suggests it interacts with amyloid-beta.

    • Tingxiang Yan
    • Jingjing Liang
    • Xinglong Wang
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-16