Nature Search

Erratum: MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Duy Tin Truong
Eric A Franzosa
Nicola Segata
Amendments and Corrections30 Dec 2015
Nature Methods

Volume: 13, P: 101
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

Integration of metagenomic assemblies and microbial isolate genomes improves profiling of uncharacterized species.

Aitor Blanco-Míguez
Francesco Beghini
Nicola Segata
ResearchOpen Access23 Feb 2023
Nature Biotechnology

Volume: 41, P: 1633-1644
The short-term impact of probiotic consumption on the oral cavity microbiome

Erik Dassi
Pamela Ferretti
Nicola Segata
ResearchOpen Access11 Jul 2018
Scientific Reports

Volume: 8, P: 1-8
The person-to-person transmission landscape of the gut and oral microbiomes

Data from more than 9,700 human stool and oral metagenomes has been used to decipher the strain transmission patterns of the human microbiome from mother to infant, within households and within populations.

Mireia Valles-Colomer
Aitor Blanco-Míguez
Nicola Segata
ResearchOpen Access18 Jan 2023
Nature

Volume: 614, P: 125-135
Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Analyses from the gut microbiome of over 1,000 individuals from the PREDICT 1 study, for which detailed long-term diet information as well as hundreds of fasting and same-meal postprandial cardiometabolic blood marker measurements are available, unveil new associations between specific gut microbes, dietary habits and cardiometabolic health.

Francesco Asnicar
Sarah E. Berry
Nicola Segata
Research11 Jan 2021
Nature Medicine

Volume: 27, P: 321-332
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Multicohort analysis identifies microbial signatures of colorectal cancer in fecal microbiomes.

Andrew Maltez Thomas
Paolo Manghi
Nicola Segata
Research01 Apr 2019
Nature Medicine

Volume: 25, P: 667-678
Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Andrew Maltez Thomas
Paolo Manghi
Nicola Segata
Amendments and Corrections29 Oct 2019
Nature Medicine

Volume: 25, P: 1948
MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Duy Tin Truong
Eric A Franzosa
Nicola Segata
Correspondence29 Sept 2015
Nature Methods

Volume: 12, P: 902-903
Detecting contamination in viromes using ViromeQC

Moreno Zolfo
Federica Pinto
Nicola Segata
Correspondence20 Nov 2019
Nature Biotechnology

Volume: 37, P: 1408-1412
The minimum information about a genome sequence (MIGS) specification

Dawn Field
George Garrity
Anil Wipat
Reviews08 May 2008
Nature Biotechnology

Volume: 26, P: 541-547
Strain-level microbial epidemiology and population genomics from shotgun metagenomics

PanPhlAn detects strains and characterizes strain-specific gene content and activity within metagenomic and metatranscriptomic samples for microbial population analysis and epidemiology.

Matthias Scholz
Doyle V Ward
Nicola Segata
Research21 Mar 2016
Nature Methods

Volume: 13, P: 435-438
Prevotella diversity, niches and interactions with the human host

Prevotella is a genus of bacteria that commonly associate with humans, in various body sites. In this Review, Segata, Ercolini and colleagues discuss Prevotella diversity and the evidence for the involvement of these bacteria in human health and disease.

Adrian Tett
Edoardo Pasolli
Nicola Segata
Reviews28 May 2021
Nature Reviews Microbiology

Volume: 19, P: 585-599
Complementary intestinal mucosa and microbiota responses to caloric restriction

Kalina Duszka
Sandrine Ellero-Simatos
Walter Wahli
ResearchOpen Access27 Jul 2018
Scientific Reports

Volume: 8, P: 1-15
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Adrian Tett
Edoardo Pasolli
Nicola Segata
ResearchOpen Access22 Jun 2017
npj Biofilms and Microbiomes

Volume: 3, P: 1-12
Bidirectional communication between the Aryl hydrocarbon Receptor (AhR) and the microbiome tunes host metabolism

Agata Korecka
Anthony Dona
Sven Pettersson
ResearchOpen Access24 Aug 2016
npj Biofilms and Microbiomes

Volume: 2, P: 1-10
Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet

Adrian Tett
Andrew J Spiers
Mark J Bailey
Research05 Jul 2007
The ISME Journal

Volume: 1, P: 331-340

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Erratum: MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

The short-term impact of probiotic consumption on the oral cavity microbiome

The person-to-person transmission landscape of the gut and oral microbiomes

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Detecting contamination in viromes using ViromeQC

The minimum information about a genome sequence (MIGS) specification

Strain-level microbial epidemiology and population genomics from shotgun metagenomics

Prevotella diversity, niches and interactions with the human host

Complementary intestinal mucosa and microbiota responses to caloric restriction

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

Bidirectional communication between the Aryl hydrocarbon Receptor (AhR) and the microbiome tunes host metabolism

Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet

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