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Showing 101–150 of 1324 results
Advanced filters: Author: Alessandro Re Clear advanced filters
  • Activation of Gs signaling at mitochondria by mitoDREADD-Gs increases mitochondrial metabolism, leading to better memory in mouse models of dementia, directly linking brain mitochondrial deficits to cognitive symptoms of neurodegenerative diseases.

    • Antonio C. Pagano Zottola
    • Rebeca Martín-Jiménez
    • Etienne Hebert-Chatelain
    Research
    Nature Neuroscience
    Volume: 28, P: 1844-1857
  • DNA double strand breaks (DSBs) are among the most deleterious types of damage and there is strong evidence indicating a relationship between breaks and transcription. Here the authors provide a high-resolution, genome-wide map of induced DSBs and observe ATM-dependent transcriptional repression.

    • Fabio Iannelli
    • Alessandro Galbiati
    • Fabrizio d’Adda di Fagagna
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-12
  • Photosynthetic organisms, fungi, and animals contain distinct pathways for vitamin C biosynthesis, but the final biosynthetic step consistently involves an oxidation reaction catalysed by the aldonolactone oxidoreductases. Here, the authors investigate the origin and evolution of the diversified activities and substrate preferences featured by these enzymes using different methods and find evidence that they share a common ancestor.

    • Alessandro Boverio
    • Neelam Jamil
    • Andrea Mattevi
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-10
  • Digital trace data from search engines lacks information about the experiences of the individuals generating the data. Here the authors link search data and human computation to build a tracking model of influenza-like illness.

    • Stefan Wojcik
    • Avleen S. Bijral
    • David Lazer
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-8
  • Materials that demonstrate long-range magnetic order are synonymous with information storage. Here, the authors report the effect of pressure on two mononuclear rhenium compounds that exhibit long-range magnetic order under ambient conditions via a spin canting mechanism, whereTcis proportional to pressure.

    • Christopher H. Woodall
    • Gavin A. Craig
    • Euan K. Brechin
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-7
  • X-chromosome inactivation (XCI) contributes to sex bias in T cell immunity, but data on profiling XCI during human T cell development is still lacking. Here, the authors leverage allele-specific expression, sex-biased gene expression and DNA methylation data on human pediatric thymocytes to find surprisingly stable XCI during thymocyte differentiation.

    • Björn Gylemo
    • Maike Bensberg
    • Colm E. Nestor
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Here the authors used cryogenic electron microscopy and biochemistry to understand how yeast Mcm10 exerts its essential role in DNA replication initiation, finding that it splits the double Cdc45-MCM-GINS-Polε structure. The lagging-strand template is ejected from each MCM ring as the central channel of the helicase becomes too tight to accommodate two DNA strands.

    • Sarah S. Henrikus
    • Marta H. Gross
    • Alessandro Costa
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 31, P: 1265-1276
  • Stochastic nucleation prevents the repeatable multi-level response of phase change materials in integrated photonics. Here the authors circumvent this issue with a method using deterministic amorphization via spatially controlled microheater hotspots.

    • Hongyi Sun
    • Chuanyu Lian
    • Carlos A. Ríos Ocampo
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-10
  • Experiments and theory show how superlubricity can emerge in large flakes sliding on a surface when the lattices of the flake and the surface are incommensurate.

    • Matteo Pierno
    • Lorenzo Bruschi
    • Erio Tosatti
    Research
    Nature Nanotechnology
    Volume: 10, P: 714-718
  • Detailed structures of yeast RNA polymerase III and its initiation complex shed light on how the transcription of essential non-coding RNAs begins and allow comparisons with other RNA polymerases.

    • Guillermo Abascal-Palacios
    • Ewan Phillip Ramsay
    • Alessandro Vannini
    Research
    Nature
    Volume: 553, P: 301-306
  • Malaria chemoprevention is used for young children, but resistance mutations raise concerns on efficacy. In this analysis of trials across Africa, the authors show that prevention treatment protects >42 days against susceptible parasites but <12 days against highly resistant strains highlighting the importance of genomic surveillance for chemoprevention strategies.

    • Andria Mousa
    • Gina Cuomo-Dannenburg
    • Cally Roper
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Due to mechanical stress, hydropower systems can suffer severe fatigue damage during start-up. Here, the authors propose a machine learning procedure to identify start-up trajectories which minimize fatigue damage.

    • Till Muser
    • Ekaterina Krymova
    • Elena Vagnoni
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-11
  • Human-driven forest fragmentation could have major impacts on ecosystem functioning. This global analysis shows that the relationship between fragmentation and vegetation resilience in forests may differ depending on bioclimatic region and local environmental conditions.

    • Yongxian Su
    • Chaoqun Zhang
    • Weiqi Zhou
    Research
    Nature Ecology & Evolution
    Volume: 9, P: 1670-1684
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • Cancers evolve as they progress under differing selective pressures. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, the authors present the method TrackSig the estimates evolutionary trajectories of somatic mutational processes from single bulk tumour data.

    • Yulia Rubanova
    • Ruian Shi
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • In their study, Dorman and Bendoumou et al., reveal a post-transcriptional regulation of unspliced HIV-1 RNA by host factors MATR3, MTR4, and the viral protein Rev, identifying a previously uncharacterized post-transcriptional block in nucleocytoplasmic export, which plays a crucial role in HIV-1 latency and reactivation.

    • Agnieszka Dorman
    • Maryam Bendoumou
    • Anna Kula-Pacurar
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • The p140Cap adaptor protein is a tumour suppressor associated with improved prognosis in breast cancer. Here, the authors identify a role for p140Cap in preventing the immunosuppressive and pro-tumour function of polymorphonuclear myeloid-derived suppressor cells via downmodulation of the β-Catenin/Tumor Initiating Cells/G-CSF axi

    • Vincenzo Salemme
    • Mauro Vedelago
    • Paola Defilippi
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-22
  • Understanding molecular near neighbours is key for molecular optimization. Here, authors propose a transformer model that improves correlation between generation probability and molecular similarity, enhancing exploration of molecular neighbourhoods.

    • Alessandro Tibo
    • Jiazhen He
    • Ola Engkvist
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • By characterizing APOB-reactive CD4+ T cells in patients with atherosclerosis, Roy et al. identify effector regulatory T (eTreg) cells as the predominant autoreactive subset. These APOB-specific eTreg cells are clonally expanded, express the plaque-homing receptor CXCR6 and progressively lose their regulatory phenotype as disease severity increases.

    • Payel Roy
    • Anusha Bellapu
    • Klaus Ley
    Research
    Nature Cardiovascular Research
    Volume: 4, P: 841-856
  • Dnmt3a mutations in mouse haematopoietic stem and progenitor cells equivalent to R882 mutations in human cause increased mitochondrial respiration, suggesting that this is a mechanism of clonal haematopoiesis and a potential therapeutic target.

    • Mohsen Hosseini
    • Veronique Voisin
    • Steven M. Chan
    Research
    Nature
    Volume: 642, P: 421-430
  • Using survey and internet browsing data and expert ratings, Bhadani et al. find that incorporating partisan audience diversity into algorithmic rankings of news websites increases the trustworthiness of the sites they recommend and maintains relevance.

    • Saumya Bhadani
    • Shun Yamaya
    • Brendan Nyhan
    Research
    Nature Human Behaviour
    Volume: 6, P: 495-505
  • The BRCC36 isopeptidase complex (BRISC) is a deubiquitylase that stabilizes interferon receptors, driving inflammation. We discovered ‘BRISC molecular glue’ inhibitors (BLUEs) that selectively inactivate BRISC, promoting interferon receptor ubiquitylation and degradation to dampen immune responses.

    • Francesca Chandler
    • Poli Adi Narayana Reddy
    • Elton Zeqiraj
    ResearchOpen Access
    Nature Structural & Molecular Biology
    Volume: 32, P: 1812-1824
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Ty3 retrotransposon integrates with an exquisite specificity upstream of RNA Polymerase III-transcribed genes, such as transfer RNAs. Here the authors resolve a cryo-EM structure of an active Ty3 intasome in complex with a TFIIIB-bound tRNA promoter, shedding light into the molecular determinants of harmless retrotransposition.

    • Guillermo Abascal-Palacios
    • Laura Jochem
    • Alessandro Vannini
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-11
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Islet transplantation for type 1 diabetes management is hindered by the life-long need for immunosuppressive medications. Here, the authors report an islet encapsulation device with local anti-rejection drug release that achieves long-term diabetes reversal in male rats and reduces drug-related toxicity.

    • Jesus Paez-Mayorga
    • Jocelyn Nikita Campa-Carranza
    • Alessandro Grattoni
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-20
  • Double Asteroid Redirection Test (DART) mission’s impact on asteroid Dimorphos has led to various impact related features. Here, the authors show that those features result naturally from the dynamical interaction of the ejecta with the binary system and solar radiation pressure.

    • Fabio Ferrari
    • Paolo Panicucci
    • Filippo Tusberti
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-13
  • Idiopathic pulmonary fibrosis is associated with increased abundance of Staphylococcus and Streptococcus in the lungs. Here, the authors identify a Staphylococcus nepalensis-derived peptide, named corisin, to induce apoptosis of lung epithelial cells and exacerbation of pulmonary fibrosis in mice.

    • Corina N. D’Alessandro-Gabazza
    • Tetsu Kobayashi
    • Esteban C. Gabazza
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • Loss of Amplified in Liver Cancer 1 (ALC1) has been shown to confer PARP inhibitor hypersensitivity in BRCA-mutant cells. Here, the authors show that in ALC1-deficient BRCA-mutant cells, APE1 cleaves abasic sites at the forks resulting in DNA breaks and thereby enhances PARP inhibitor sensitivity.

    • Natasha Ramakrishnan
    • Tyler M. Weaver
    • Priyanka Verma
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • Analysis using a combination of molecular and genetic epidemiological approaches reveals an interaction between female sex and the genetic variant PNPLA3 p.I148M that might explain why some women have increased susceptibility to fatty liver disease after onset of menopause.

    • Alessandro Cherubini
    • Mahnoosh Ostadreza
    • Luca Valenti
    ResearchOpen Access
    Nature Medicine
    Volume: 29, P: 2643-2655
  • Glutathione has pleiotropic functions in different organs. Here the authors specifically examine deletion of a glutathione synthetic enzyme in the liver of adult mice and show that lack of glutathione affects lipid abundance through repressing NRF2.

    • Gloria Asantewaa
    • Emily T. Tuttle
    • Isaac S. Harris
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • NK cells play an important role in anti-tumour immunity, however, the immune-hostile microenvironment often impairs their function. Here authors show that cancers disable autophagy in NK cells, and by restoring this process, intra-tumour NK cells could be re-invigorated.

    • Federica Portale
    • Roberta Carriero
    • Diletta Di Mitri
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Phenomena like imitation, herding and positive feedbacks in the complex financial markets characterize the emergence of endogenous instabilities, which however is still understudied. Here the authors show that the graph-based approach is helpful to timely recognize phases of increasing instability that can drive the system to a new market configuration.

    • Alessandro Spelta
    • Andrea Flori
    • Fabio Pammolli
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-9
  • This study shows how the yeast Ctf4 protein couples the DNA helicase, Cdc45–MCM–GINS, to DNA polymerase α — the GINS subunit of the helicase and the polymerase use a similar interaction to bind Ctf4, suggesting that, as Ctf4 is a trimer, two polymerases could be simultaneously coupled to a single helicase during lagging-strand synthesis.

    • Aline C. Simon
    • Jin C. Zhou
    • Luca Pellegrini
    Research
    Nature
    Volume: 510, P: 293-297
  • The cell wall of the bacterial pathogen Group A Streptococcus is decorated with a polysaccharide termed GAC, which is a target for vaccine development. Here, Rush et al. characterize the linkage between GAC and peptidoglycan, and identify a protein that deacetylates the linkage and thus protects the pathogen against host cationic antimicrobial proteins.

    • Jeffrey S. Rush
    • Prakash Parajuli
    • Natalia Korotkova
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-16