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Showing 1–4 of 4 results
Advanced filters: Author: Arthur L. Delcher Clear advanced filters

  • This algorithm for the assignment of phylogenetic groups to fragments generated by metagenomic sequencing projects improves on the currently required 1 kb fragment length for classification. Trained on 539 complete genomes, Phymm can classify reads as short as 100 bp. Combining Phymm with the sequence alignment algorithm BLAST further improves accuracy.

    • Arthur Brady
    • Steven L Salzberg
    Research
    Nature Methods
    Volume: 6, P: 673-676

  • The International Strawberry Sequencing Consortium reports the draft genome of the woodland strawberry (Fragaria vesca). The genome of this diploid species should serve as a reference genome for the Fragaria genus, as the cultivated strawberry (Fragaria × ananassa) is an octoploid where F. vesca is predicted to be a subgenome donor.

    • Vladimir Shulaev
    • Daniel J Sargent
    • Kevin M Folta
    ResearchOpen Access
    Nature Genetics
    Volume: 43, P: 109-116

  • An international consortium reports the genomic sequence for ten Drosophila species, and compares them to two other previously published Drosophila species. These data are invaluable for drawing evolutionary conclusions across an entire phylogeny of species at once.

    • Andrew G. Clark
    • Michael B. Eisen
    • Iain MacCallum
    Research
    Nature
    Volume: 450, P: 203-218

  • Researchers from Hawaii and an international consortium have produced a draft genome assembly for 'SunUp', the first commercial virus-resistant transgenic fruit tree. Comparison of this plant genome to those of Arabidopsis and others sheds light on evolution of characteristics such as biosynthesis, starch deposition, control of photosynthesis and pathways for creating volatile compounds.

    • Ray Ming
    • Shaobin Hou
    • Maqsudul Alam
    ResearchOpen Access
    Nature
    Volume: 452, P: 991-996