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Showing 1–50 of 78 results
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  • Robustness checks and reproduction of analyses with existing and updated data based on 110 articles in economics and political science journals with data and code-sharing requirements found high levels of robustness and reproducibility and determined that robustness was not dependent on author characteristics or data availability.

    • Abel Brodeur
    • Derek Mikola
    • Yaolang Zhong
    Research
    Nature
    Volume: 652, P: 151-156
  • In a randomized study involving 9 general cardiologists and 107 real-world patient cases, assistance from a specifically tailored large language model resulted in preferable responses on complex case management compared to physicians alone, as rated by specialist cardiologists using a multidimensional scoring rubric.

    • Jack W. O’Sullivan
    • Anil Palepu
    • Tao Tu
    ResearchOpen Access
    Nature Medicine
    Volume: 32, P: 616-623
  • This Resource paper presents a global SARS-CoV-2 phylogenetic tree of 4,471,579 high-quality genomes consistently constructed by Viridian, an efficient amplicon-aware assembler.

    • Martin Hunt
    • Angie S. Hinrichs
    • Zamin Iqbal
    ResearchOpen Access
    Nature Methods
    Volume: 23, P: 653-662
  • Tumor draining lymph nodes are essential for immunotherapy efficacy in head and neck squamous cell carcinoma (HNSCC). Here, the authors show that sequential tumor-directed radiotherapy and PD-1 inhibition and migratory CCR7+ dendritic cells are required for complete and durable tumor responses in HNSCC.

    • Robert Saddawi-Konefka
    • Riyam Al Msari
    • Joseph A. Califano
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Genome-wide association studies (GWAS) have improved our understanding of the genetic basis of lung adenocarcinoma but known susceptibility variants explain only a small fraction of the familial risk. Here, the authors perform a two-stage GWAS and report 12 novel genetic loci associated with lung adenocarcinoma in East Asians.

    • Jianxin Shi
    • Kouya Shiraishi
    • Qing Lan
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • John Chambers, Jaspal Kooner, Pim van der Harst, Shyong Tai, Paul Elliott, Jiang He, Norihiro Kato and colleagues performed a genome-wide association study of blood pressure phenotypes in individuals of European, East Asian and South Asian ancestry. They find trait-associated SNPs at 12 loci, some of which are associated with methylation at nearby CpG sites.

    • Norihiro Kato
    • Marie Loh
    • John C Chambers
    Research
    Nature Genetics
    Volume: 47, P: 1282-1293
  • Samples of different body regions from hundreds of human donors are used to study how genetic variation influences gene expression levels in 44 disease-relevant tissues.

    • François Aguet
    • Andrew A. Brown
    • Jingchun Zhu
    ResearchOpen Access
    Nature
    Volume: 550, P: 204-213
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • The mechanism by which bimetallic catalysts can outperform their monometallic counterparts is often unexplained. Now nitrate hydrogenation on bimetallic catalysts is shown to proceed via the electrochemical coupling of hydrogen oxidation and nitrate reduction half-reactions, each of which occurs on one metal component.

    • Kunal M. Lodaya
    • Bryan Y. Tang
    • Yogesh Surendranath
    Research
    Nature Catalysis
    Volume: 7, P: 262-272
  • Smad3, a transcription factor activated by TGF-β, has been implicated in tumorigenesis. Here the authors show that Smad3 inhibits NK cell differentiation and effector function by repressing NFIL3, and that genetic or pharmacological blockade of Smad3 expands tumour-suppressive NK cells and restricts tumour growth in mice.

    • Patrick Ming-Kuen Tang
    • Shuang Zhou
    • Hui-Yao Lan
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-15
  • By integrating the serum concentration of a broadly neutralizing antibody (bNAb) with its in vitro 80% inhibitory concentration, the PT80 biomarker may be used to guide target levels of bNAbs for effective prevention of HIV-1 acquisition.

    • Peter B. Gilbert
    • Yunda Huang
    • Lynn Morris
    ResearchOpen Access
    Nature Medicine
    Volume: 28, P: 1924-1932
  • Manipulation of topology of the electronic structure is highly desirable for practical applications of topological materials. Here the authors demonstrate tuning and annihilation of Weyl nodes in momentum space by means of the Zeeman effect in a strongly correlated topological semimetal Ce3Bi4Pd3.

    • Sami Dzsaber
    • Diego A. Zocco
    • Silke Paschen
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-7
  • A cross-ancestry meta-analysis of genome-wide association studies identifies association signals for stroke and its subtypes at 89 (61 new) independent loci, reveals putative causal genes, highlighting F11, KLKB1, PROC, GP1BA, LAMC2 and VCAM1 as potential drug targets, and provides cross-ancestry integrative risk prediction.

    • Aniket Mishra
    • Rainer Malik
    • Stephanie Debette
    ResearchOpen Access
    Nature
    Volume: 611, P: 115-123
  • Deep brain stimulation has been investigated as a potential treatment for cognitive impairments in Alzheimer’s disease. Here the authors carry out post hoc analysis of multi-center cohorts to investigate the anatomical and functional correlates of effective deep brain stimulation, and find that stimulating circuit of Papez, fornix and bed nucleus of the stria terminalis, and a multi-region functional network, were associated with clinical improvement.

    • Ana Sofía Ríos
    • Simón Oxenford
    • Andreas Horn
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-14
  • High-quality diploid assemblies of potato genomes from 24 wild and 20 cultivated potatoes provide insights into the complex evolution and diversity of potatoes, and could have applications in the breeding of hybrid potatoes.

    • Dié Tang
    • Yuxin Jia
    • Sanwen Huang
    ResearchOpen Access
    Nature
    Volume: 606, P: 535-541
  • Phenotypic variation and diseases are influenced by factors such as genetic variants and gene expression. Here, Barbeira et al. develop S-PrediXcan to compute PrediXcan results using summary data, and investigate the effects of gene expression variation on human phenotypes in 44 GTEx tissues and >100 phenotypes.

    • Alvaro N. Barbeira
    • Scott P. Dickinson
    • Hae Kyung Im
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-20
  • Charge transfer and chemical kinetics both contribute to the overall overpotential that is observed in a typical electrocatalytic experiment, but it remains difficult to resolve the individual contributions. Here a Pd membrane double cell is used to separate the charge transfer and chemical steps in the hydrogen evolution reaction to evaluate how experimental conditions affect the individual steps.

    • Bryan Y. Tang
    • Ryan P. Bisbey
    • Yogesh Surendranath
    Research
    Nature Catalysis
    Volume: 6, P: 339-350
  • Vitamin D deficiency is associated with multiple human pathologic conditions. In a genome-wide association study of 79,366 individuals, Jiang et al. replicate four and identify two new genetic loci for serum levels of 25-hydroxyvitamin D and find evidence for a shared genetic basis with autoimmune diseases.

    • Xia Jiang
    • Paul F. O’Reilly
    • Douglas P. Kiel
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-12
  • White matter hyperintensities (WMH) are a common brain-imaging feature of cerebral small vessel disease. Here, the authors carry out a GWAS and followup analyses for WMH-volume, implicating several variants with potential for risk stratification and drug targeting.

    • Muralidharan Sargurupremraj
    • Hideaki Suzuki
    • Stéphanie Debette
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-18
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • Although homogeneous hydride transfer reactivity is well understood, the heterogeneous counterpart at metal surfaces remains rather unexplored. This work introduces the electrocatalytic hydrogen reduction reaction, which in net reduces H2 to reactive hydrides via the intermediacy of surface M−H species. The study reveals that hydride transfer from surface M−H species can be driven by electrical polarization.

    • Hai-Xu Wang
    • Wei Lun Toh
    • Yogesh Surendranath
    Research
    Nature Catalysis
    Volume: 6, P: 351-362
  • 1000 Genomes imputation can increase the power of genome-wide association studies to detect genetic variants associated with human traits and diseases. Here, the authors develop a method to integrate and analyse low-coverage sequence data and SNP array data, and show that it improves imputation performance.

    • Olivier Delaneau
    • Jonathan Marchini
    • Leena Peltonenz
    Research
    Nature Communications
    Volume: 5, P: 1-9
  • Bennu’s surface has experienced continuous changes, mostly induced by its accelerating spin rate, which could have resulted in a collapse of its interior in the past. This scenario is also supported by the heterogeneity of Bennu’s internal mass distribution.

    • D. J. Scheeres
    • J. W. McMahon
    • B. Marty
    Research
    Nature Astronomy
    Volume: 3, P: 352-361
  • Sun et al. report human lifespan changes in the brain’s functional connectome in 33,250 individuals, which highlights critical growth milestones and distinct maturation patterns and offers a normative reference for development, aging and diseases.

    • Lianglong Sun
    • Tengda Zhao
    • Yong He
    Research
    Nature Neuroscience
    Volume: 28, P: 891-901
  • Distal appendages (DAPs) at the cilia base mediate membrane docking during ciliogenesis. Here the authors use super-resolution microscopy to map 16 centriole distal end components, revealing the structure of the backbone of the DAP, as well as a previously undescribed distal appendage matrix.

    • T. Tony Yang
    • Weng Man Chong
    • Jung-Chi Liao
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-11
  • Sorghum is an African grass that is grown for food, animal feed and fuel. The current paper presents an initial analysis of the ∼730 megabase genome of Sorghum bicolor. Genome analysis and its comparison with maize and rice shed light on grass genome evolution and also provide insights into the evolution of C4 photosynthesis, as well as protein coding genes and miRNAs that might contribute to sorghum's drought tolerance.

    • Andrew H. Paterson
    • John E. Bowers
    • Daniel S. Rokhsar
    ResearchOpen Access
    Nature
    Volume: 457, P: 551-556
  • This work introduces a wet lab and computational pipeline, Napu, for small variant calling and de novo assembly of Nanopore sequencing data, which leads to comparable performances to short-read sequencing and allows for large-scale long-read sequencing projects.

    • Mikhail Kolmogorov
    • Kimberley J. Billingsley
    • Benedict Paten
    Research
    Nature Methods
    Volume: 20, P: 1483-1492
  • Delivering genes to and across the brain vasculature efficiently and specifically across species remains challenging. Here, the authors show that endothelial-specific AAVs with serotype flexibility enable redosing and transform the brain vasculature into an in vivo biofactory in genetically diverse rodents. In primates, these vectors cross the blood-brain-barrier and show broad tropism.

    • Xinhong Chen
    • Damien A. Wolfe
    • Viviana Gradinaru
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-19
  • RNA sequencing (RNA-seq) is increasingly being integrated into molecular tumour profiling but remains underutilized for clinical decision-making. This Perspective presents a framework for assessing the therapeutic, diagnostic and prognostic actionability of RNA-seq findings as well as an ‘actionable transcriptome’ list to help guide the application of RNA-seq findings in oncology practice.

    • Amber Johnson
    • Yifei Shen
    • Funda Meric-Bernstam
    Reviews
    Nature Reviews Clinical Oncology
    Volume: 23, P: 213-229
  • Lakes are essential components of the hydrological and biogeochemical cycles. Here, Pi et al develop a global lake dataset called GLAKES via high-resolution satellite images and deep learning to examine global lake changes over four decades.

    • Xuehui Pi
    • Qiuqi Luo
    • Brett A. Bryan
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-12
  • The enzyme argininosuccinate lyase (ASL) generates the amino acid arginine, the precursor to both urea and nitric oxide. However, arginine supplementation is not sufficient to correct all of the symptoms of individuals with a congenital deficiency of this enzyme. Ayelet Erez et al. explain this paradox by showing that ASL has a role in nitric oxide synthesis that is independent of its catalytic activity and provide evidence that therapy with agents boosting nitric oxide levels might be beneficial in ASL-deficient individuals.

    • Ayelet Erez
    • Sandesh C S Nagamani
    • Brendan Lee
    Research
    Nature Medicine
    Volume: 17, P: 1619-1626
  • Multiple transcriptome approaches, including single-cell sequencing, demonstrate that escape from X chromosome inactivation is widespread and occasionally variable between cells, chromosomes, and tissues, resulting in sex-biased expression of at least 60 genes and potentially contributing to sex-specific differences in health and disease.

    • Taru Tukiainen
    • Alexandra-Chloé Villani
    • Daniel G. MacArthur
    ResearchOpen Access
    Nature
    Volume: 550, P: 244-248
  • This report from the 1000 Genomes Project describes the genomes of 1,092 individuals from 14 human populations, providing a resource for common and low-frequency variant analysis in individuals from diverse populations; hundreds of rare non-coding variants at conserved sites, such as motif-disrupting changes in transcription-factor-binding sites, can be found in each individual.

    • Gil A. McVean
    • David M. Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 491, P: 56-65
  • A randomized trial in patients hospitalized with COVID-19 showed no benefit and potentially increased harm associated with the use of convalescent plasma, with subgroup analyses suggesting that the antibody profile in donor plasma is critical in determining clinical outcomes.

    • Philippe Bégin
    • Jeannie Callum
    • Donald M. Arnold
    ResearchOpen Access
    Nature Medicine
    Volume: 27, P: 2012-2024
  • Vicinity of small bodies might be dangerous to the spacecrafts and to their instrumentation. Here the authors show the operational environment of asteroid Bennu, validate its photometric phase function and demonstrate the accelerating rotational rate due to YORP effect using the data acquired during the approach phase of OSIRIS-REx mission.

    • C. W. Hergenrother
    • C. K. Maleszewski
    • B. Marty
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-10
  • An integrative genomic analysis of several hundred endometrial carcinomas shows that a minority of tumour samples carry copy number alterations or TP53 mutations and many contain key cancer-related gene mutations, such as those involved in canonical pathways and chromatin remodelling; a reclassification of endometrial tumours into four distinct types is proposed, which may have an effect on patient treatment regimes.

    • Douglas A. Levine
    • Gad Getz
    • Douglas A. Levine
    ResearchOpen Access
    Nature
    Volume: 497, P: 67-73